[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.1.5

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
4016ff05 by Steffen Möller at 2019-05-24T16:40:28Z
New upstream version 1.1.5
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30 changed files:

- .travis.yml
- HISTORY.md
- bcbio/distributed/ipythontasks.py
- bcbio/galaxy/nglims.py
- bcbio/heterogeneity/loh.py
- bcbio/install.py
- bcbio/pipeline/region.py
- bcbio/pipeline/run_info.py
- bcbio/provenance/system.py
- bcbio/qc/multiqc.py
- bcbio/qc/srna.py
- bcbio/rnaseq/ericscript.py
- bcbio/rnaseq/gtf.py
- bcbio/srna/mirdeep.py
- bcbio/structural/prioritize.py
- bcbio/structural/regions.py
- bcbio/structural/shared.py
- bcbio/utils.py
- bcbio/variation/coverage.py
- bcbio/variation/gatkfilter.py
- bcbio/variation/mutect2.py
- docs/conf.py
- docs/contents/cloud.rst
- docs/contents/configuration.rst
- docs/contents/installation.rst
- docs/contents/parallel.rst
- docs/contents/presentations.rst
- docs/contents/teaching.rst
- requirements-conda.txt
- requirements.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/4016ff058ea96bdb5999731d4add1cd2d9dcaf2d

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