[med-svn] [Git][med-team/virulencefinder][master] 2 commits: Depends: python3-cgecore

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / virulencefinder


Commits:
231072cb by Andreas Tille at 2019-05-24T19:23:55Z
Depends: python3-cgecore

- - - - -
0273a5da by Andreas Tille at 2019-05-24T19:33:27Z
Fix build

- - - - -


3 changed files:

- debian/control
- − debian/lintian-overrides
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -6,7 +6,8 @@ Priority: optional
 Build-Depends: debhelper (>= 12~),
                dh-python,
                python3,
-               python3-tabulate
+               python3-tabulate,
+               python3-cgecore
 Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/virulencefinder
 Vcs-Git: https://salsa.debian.org/med-team/virulencefinder.git
@@ -15,9 +16,10 @@ Homepage: https://bitbucket.org/genomicepidemiology/virulencefinder
 Package: virulencefinder
 Architecture: any
 Depends: ${misc:Depends},
-         ${python:Depends},
+         ${python3:Depends},
          python3,
-         python3-tabulate
+         python3-tabulate,
+         python3-cgecore
 Description: identify viruelnce genes in total or partial sequenced isolates of bacteria
  The VirulenceFinder service contains one Python script
  virulencefinder.py which is the script of the latest version of the


=====================================
debian/lintian-overrides deleted
=====================================
@@ -1,2 +0,0 @@
-# see https://lists.debian.org/debian-med/2018/06/msg00043.html
-virulencefinder: script-with-language-extension usr/bin/*.*


=====================================
debian/rules
=====================================
@@ -10,7 +10,7 @@ export PYBUILD_CLEAN_ARGS=rm -rf test/results_tab.tsv
 
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-	./virulencefinder.py -i test/test.fsa -o test/ -mp blastn -x -q ; \
+	./virulencefinder.py -i test/test.fsa -o test/ -p test/database/ -mp blastn -x -q ; \
 	file=test/results_tab.tsv ; \
 	DIFF=$$(diff $file test/test_results.tsv) ; \
 	if [ "$DIFF" == "" ] && [ -s $file ] ; then \



View it on GitLab: https://salsa.debian.org/med-team/virulencefinder/compare/252afda13996b8e10071f0fc40d8e9d136cffc4e...0273a5da4ae6041e536fcfdf73c32674670b6d6a

-- 
View it on GitLab: https://salsa.debian.org/med-team/virulencefinder/compare/252afda13996b8e10071f0fc40d8e9d136cffc4e...0273a5da4ae6041e536fcfdf73c32674670b6d6a
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