[med-svn] [Git][med-team/nanopolish][master] 11 commits: New upstream version 0.11.2

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / nanopolish


Commits:
386f3288 by Michael R. Crusoe at 2019-11-08T17:16:12Z
New upstream version 0.11.2
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f078bf3c by Michael R. Crusoe at 2019-11-08T17:16:12Z
New upstream version

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36361684 by Michael R. Crusoe at 2019-11-08T17:16:22Z
Update upstream source from tag 'upstream/0.11.2'

Update to upstream version '0.11.2'
with Debian dir 2d683819e5a0044b4329eff3ec9dd10b9bb272ea
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946cc35a by Michael R. Crusoe at 2019-11-08T17:16:23Z
debhelper-compat 12

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ea0ac703 by Michael R. Crusoe at 2019-11-08T17:16:25Z
Standards-Version: 4.4.0

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8f2a9ff3 by Michael R. Crusoe at 2019-11-08T17:21:39Z
now we don't need the 2to3 patch

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1fe5f135 by Michael R. Crusoe at 2019-11-08T17:36:31Z
fixed #! for the python scripts

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d67a6668 by Michael R. Crusoe at 2019-11-08T17:47:44Z
finish transition to Python 3 package

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5ddf068e by Michael R. Crusoe at 2019-11-08T17:47:59Z
add missing Perl dependency

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7cbebda9 by Michael R. Crusoe at 2019-11-08T17:48:01Z
Set upstream metadata fields: Repository.
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b32c1f45 by Michael R. Crusoe at 2019-11-08T17:49:07Z
py3 fixup

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30 changed files:

- .travis.yml
- + DEVELOPERS.md
- Makefile
- README.md
- debian/changelog
- − debian/compat
- debian/control
- − debian/patches/2to3.patch
- + debian/patches/add_interp
- debian/patches/series
- debian/rules
- debian/upstream/metadata
- docs/source/conf.py
- docs/source/debug.rst
- docs/source/manual.rst
- docs/source/quickstart_call_methylation.rst
- docs/source/quickstart_polya.rst
- scripts/calculate_methylation_frequency.py
- scripts/convert_all_models.py
- scripts/convert_model_to_header.py
- scripts/extract_reads_aligned_to_region.py
- scripts/nanopolish_makerange.py
- scripts/nanopolish_merge.py
- + scripts/polya_training/dump_signal.py
- + scripts/polya_training/environment.yml
- + scripts/polya_training/hmmplot.py
- + scripts/polya_training/retrain_emission.py
- + scripts/polya_training/workflow.md
- scripts/reestimate_polya_emissions.py
- src/alignment/nanopolish_alignment_db.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/compare/583b1d759f64c0562ef5b08dd3dfe33d413c81c9...b32c1f45f2b9646ce5ccf964be6c468f162c8b66

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View it on GitLab: https://salsa.debian.org/med-team/nanopolish/compare/583b1d759f64c0562ef5b08dd3dfe33d413c81c9...b32c1f45f2b9646ce5ccf964be6c468f162c8b66
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