[med-svn] [Git][med-team/nanopolish][upstream] New upstream version 0.11.2

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / nanopolish


Commits:
386f3288 by Michael R. Crusoe at 2019-11-08T17:16:12Z
New upstream version 0.11.2
- - - - -


30 changed files:

- .travis.yml
- + DEVELOPERS.md
- Makefile
- README.md
- docs/source/conf.py
- docs/source/debug.rst
- docs/source/manual.rst
- docs/source/quickstart_call_methylation.rst
- docs/source/quickstart_polya.rst
- scripts/calculate_methylation_frequency.py
- scripts/convert_all_models.py
- scripts/convert_model_to_header.py
- scripts/extract_reads_aligned_to_region.py
- scripts/nanopolish_makerange.py
- scripts/nanopolish_merge.py
- + scripts/polya_training/dump_signal.py
- + scripts/polya_training/environment.yml
- + scripts/polya_training/hmmplot.py
- + scripts/polya_training/retrain_emission.py
- + scripts/polya_training/workflow.md
- scripts/reestimate_polya_emissions.py
- src/alignment/nanopolish_alignment_db.cpp
- src/common/nanopolish_common.h
- src/nanopolish_call_methylation.cpp
- src/nanopolish_call_variants.cpp
- src/nanopolish_haplotype.cpp
- src/nanopolish_index.cpp
- src/nanopolish_raw_loader.cpp
- src/nanopolish_read_db.cpp
- src/nanopolish_vcf2fasta.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/nanopolish/commit/386f3288149b22eb39cd52ddee9f2e6354537593

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