[med-svn] [Git][med-team/canu][upstream] New upstream version 1.9+dfsg

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / canu


Commits:
e36cdb98 by Steffen Moeller at 2019-11-10T10:12:41Z
New upstream version 1.9+dfsg
- - - - -


30 changed files:

- README.md
- addCopyrights-BuildData.pl
- addCopyrights.dat
- addCopyrights.pl
- + buildRelease-DNAnexus.sh
- buildRelease.sh
- documentation/source/conf.py
- documentation/source/faq.rst
- documentation/source/parameter-reference.rst
- documentation/source/quick-start.rst
- documentation/source/tutorial.rst
- − logo.jpg
- src/Makefile
- src/bogart/AS_BAT_BestOverlapGraph.C
- + src/bogart/AS_BAT_DetectSpurs.C
- + src/bogart/AS_BAT_DetectSpurs.H
- src/bogart/AS_BAT_Logging.C
- src/bogart/AS_BAT_Logging.H
- src/bogart/AS_BAT_MergeOrphans.C
- src/bogart/AS_BAT_OptimizePositions.C
- src/bogart/AS_BAT_Outputs.C
- src/bogart/AS_BAT_OverlapCache.C
- src/bogart/AS_BAT_PlaceReadUsingOverlaps.C
- src/bogart/AS_BAT_PlaceReadUsingOverlaps.H
- src/bogart/AS_BAT_Unitig_AddRead.C
- src/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.C
- − src/bogart/addReadsToUnitigs.C
- src/bogart/bogart.C
- src/bogart/bogart.mk
- src/canu_version_update.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/canu/commit/e36cdb98aaa5e7eb42c41bbc202e0be892355360

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