[med-svn] [Git][med-team/spades][master] 2 commits: Integer division in Python3

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / spades


Commits:
c224015a by Andreas Tille at 2019-11-18T14:33:14Z
Integer division in Python3

- - - - -
927512e6 by Andreas Tille at 2019-11-18T15:03:15Z
Upload to unstable

- - - - -


2 changed files:

- debian/changelog
- debian/patches/python3.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-spades (3.13.1+dfsg-1) UNRELEASED; urgency=medium
+spades (3.13.1+dfsg-1) unstable; urgency=medium
 
   * Fix watch file
   * Moved packaging to Python3
@@ -13,7 +13,7 @@ spades (3.13.1+dfsg-1) UNRELEASED; urgency=medium
   * Drop webvis dir from source which has compressed JS but its not used
     in the binary package
 
- -- Andreas Tille <tille at debian.org>  Tue, 08 Oct 2019 18:17:07 +0200
+ -- Andreas Tille <tille at debian.org>  Mon, 18 Nov 2019 15:34:43 +0100
 
 spades (3.13.0+dfsg2-2) unstable; urgency=medium
 


=====================================
debian/patches/python3.patch
=====================================
@@ -1170,3 +1170,14 @@ Description: Make sure Python3 interpreter is used in scripts
  #src/tools/dataset_hammer /mnt/ace/acestorage/snikolenko/090408_ultrashort/09
  #src/tools/dataset_hammer /mnt/ace/acestorage/data/input/x5/makarich.fbb.msu.ru/run1_fca/Quaked/
  #src/tools/dataset_hammer ~/temp/02
+--- a/assembler/src/spades_pipeline/truspades/generate_quality.py
++++ b/assembler/src/spades_pipeline/truspades/generate_quality.py
+@@ -52,7 +52,7 @@ def CountContigQuality(contigs, qual):
+         for pos in range(len(contigs[i])):
+             q = qual[i][pos]
+             if q[1] != 0:
+-                qual_list[pos] = chr(q[0] / q[1])
++                qual_list[pos] = chr(q[0] // q[1])
+             else:
+                 cnt += 1
+         contigs[i].qual = "".join(qual_list)



View it on GitLab: https://salsa.debian.org/med-team/spades/compare/2dd0d58b8f01d2914d2d134c21123ade6d05f28b...927512e62cdde536f9f67589549fb95c4e8fec1f

-- 
View it on GitLab: https://salsa.debian.org/med-team/spades/compare/2dd0d58b8f01d2914d2d134c21123ade6d05f28b...927512e62cdde536f9f67589549fb95c4e8fec1f
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