[med-svn] [Git][med-team/infernal][master] 5 commits: Add python3 build-dep for 'make check'

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / infernal


Commits:
f40a6f6d by Michael R. Crusoe at 2019-11-30T10:06:29Z
Add python3 build-dep for 'make check'

- - - - -
7e3cc6e2 by Michael R. Crusoe at 2019-11-30T10:06:32Z
Secure URI in copyright format

- - - - -
ab53cb95 by Michael R. Crusoe at 2019-11-30T10:06:33Z
Remove trailing whitespace in debian/changelog

- - - - -
3e4182b3 by Michael R. Crusoe at 2019-11-30T10:06:33Z
Trim trailing whitespace.

Fixes lintian: file-contains-trailing-whitespace
See https://lintian.debian.org/tags/file-contains-trailing-whitespace.html for more details.

- - - - -
21c20708 by Michael R. Crusoe at 2019-11-30T10:06:33Z
Set upstream metadata fields: Bug-Submit.
- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/copyright
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+infernal (1.1.3-2) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Add python3 build-dep for `make check`
+  * Secure URI in copyright format
+  * Remove trailing whitespace in debian/changelog
+  * Trim trailing whitespace.
+  * Set upstream metadata fields: Bug-Submit.
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Sat, 30 Nov 2019 11:00:30 +0100
+
 infernal (1.1.3-1) unstable; urgency=medium
 
   * New upstream version
@@ -39,7 +50,7 @@ infernal (1.1.1-5) unstable; urgency=medium
   [Canberk Koç]
   * Added Autopkgtest suite
   * debian/rules file changed
-  * debian/tests directory added 
+  * debian/tests directory added
 
   [ Andreas Tille ]
   * Move packaging from SVN to Git
@@ -78,7 +89,7 @@ infernal (1.1.1-2) unstable; urgency=medium
 infernal (1.1.1-1) unstable; urgency=medium
 
   * Team upload.
-  * New upstream release. 
+  * New upstream release.
 
  -- Charles Plessy <plessy at debian.org>  Fri, 08 Aug 2014 21:45:26 +0900
 
@@ -86,7 +97,7 @@ infernal (1.1-1) unstable; urgency=low
 
   * Team upload.
   * New upstream release.
-  * Removed i386 architecture as some processors do not provide SSE2. 
+  * Removed i386 architecture as some processors do not provide SSE2.
   * Conforms with Policy 3.9.5.
 
  -- Charles Plessy <plessy at debian.org>  Sun, 01 Dec 2013 10:30:00 +0900
@@ -216,4 +227,3 @@ infernal (0.81-1) experimental; urgency=low
   * Initial release (Closes: #441840)
 
  -- Steffen Moeller <moeller at debian.org>  Mon, 10 Sep 2007 23:15:37 +0200
-


=====================================
debian/control
=====================================
@@ -5,7 +5,8 @@ Uploaders: Steffen Moeller <moeller at debian.org>,
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 12),
-               libperl4-corelibs-perl
+               libperl4-corelibs-perl,
+               python3
 Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/infernal
 Vcs-Git: https://salsa.debian.org/med-team/infernal.git


=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Contact: Infernal developer team at HHMI Janelia Farm:
 			Diana Kolbe <kolbed janelia.hhmi.org>
 			Eric Nawrocki <nawrockie janelia.hhmi.org>


=====================================
debian/upstream/metadata
=====================================
@@ -1,21 +1,22 @@
 Reference:
- author: Nawrocki, Eric P. and Kolbe, Diana L. and Eddy, Sean R.
- title: "Infernal 1.0: inference of RNA alignments"
- journal: Bioinformatics
- volume: 25
- number: 10
- pages: 1335-1337
- doi: 10.1093/bioinformatics/btp157
- PMID: 19307242
- year: 2009
- URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/10/1335
- eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/25/10/1335.pdf
+  author: Nawrocki, Eric P. and Kolbe, Diana L. and Eddy, Sean R.
+  title: "Infernal 1.0: inference of RNA alignments"
+  journal: Bioinformatics
+  volume: 25
+  number: 10
+  pages: 1335-1337
+  doi: 10.1093/bioinformatics/btp157
+  PMID: 19307242
+  year: 2009
+  URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/10/1335
+  eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/25/10/1335.pdf
 Registry:
- - Name: OMICtools
-   Entry: OMICS_00977
- - Name: SciCrunch
-   Entry: SCR_011809
- - Name: conda:bioconda
-   Entry: infernal
- - Name: bio.tools
-   Entry: NA  # infernal_cmscan does not fit
+- Name: OMICtools
+  Entry: OMICS_00977
+- Name: SciCrunch
+  Entry: SCR_011809
+- Name: conda:bioconda
+  Entry: infernal
+- Name: bio.tools
+  Entry: NA   # infernal_cmscan does not fit
+Bug-Submit: eric.nawrocki at nih.gov



View it on GitLab: https://salsa.debian.org/med-team/infernal/compare/a5757fc86967a76080cd65abe86b6a8769186430...21c20708447abd0b24921c624af953f4983e555a

-- 
View it on GitLab: https://salsa.debian.org/med-team/infernal/compare/a5757fc86967a76080cd65abe86b6a8769186430...21c20708447abd0b24921c624af953f4983e555a
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20191130/9e8c337c/attachment-0001.html>