[med-svn] [Git][med-team/bcalm][master] Decompressed compressed files and more verbosity

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / bcalm


Commits:
ca037c3a by Shayan Doust at 2019-10-02T19:45:02Z
Decompressed compressed files and more verbosity

- - - - -


2 changed files:

- debian/missing-sources/simple_test.sh
- debian/tests/run-unit-test


Changes:

=====================================
debian/missing-sources/simple_test.sh
=====================================
@@ -2,7 +2,7 @@
     
 #rm -f reference.fasta
 #wget https://raw.githubusercontent.com/GATB/MindTheGap/f5cb0fec816686c7393772787d736565c4f056a4/test/full_test/reference.fasta >& /dev/null
-bcalm -in reference.fasta -abundance-min 1 > /dev/null >& /dev/null
+bcalm -in reference.fasta -abundance-min 1
 #rm -rf reference.unitigs.fa.glue*
 #rm -f compare_fasta.py
 #wget https://raw.githubusercontent.com/GATB/minia/master/test/compare_fasta.py >& /dev/null


=====================================
debian/tests/run-unit-test
=====================================
@@ -14,5 +14,7 @@ cp -a /usr/share/doc/${pkg}/test/* "${AUTOPKGTEST_TMP}"
 
 cd "${AUTOPKGTEST_TMP}"
 
+find . -name "*.gz" -exec gunzip \{\} \;
+
 bash run-tiny.sh
 bash simple_test.sh



View it on GitLab: https://salsa.debian.org/med-team/bcalm/commit/ca037c3a5d1eb86e7e2d612a51e875d374271da9

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View it on GitLab: https://salsa.debian.org/med-team/bcalm/commit/ca037c3a5d1eb86e7e2d612a51e875d374271da9
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