[med-svn] [Git][med-team/khmer][master] d/u/metadata: yamllint
Steffen Möller
gitlab at salsa.debian.org
Sat Oct 5 12:52:33 BST 2019
Steffen Möller pushed to branch master at Debian Med / khmer
Commits:
f378b993 by Steffen Moeller at 2019-10-05T11:52:19Z
d/u/metadata: yamllint
- - - - -
1 changed file:
- debian/upstream/metadata
Changes:
=====================================
debian/upstream/metadata
=====================================
@@ -1,98 +1,103 @@
Bug-Database: https://github.com/dib-lab/khmer/issues
Bug-Submit: https://github.com/dib-lab/khmer/issues/new
-Changelog: https://raw.githubusercontent.com/dib-lab/khmer/master/ChangeLog
+Changelog: https://raw.githubusercontent.com/dib-lab/khmer/master/ChangeLog
Contact: khmer-project at idyll.org
-Funding: AFRI Competitive Grant no. 2010-65205-20361 from the USDA NIFA, National Human Genome Research Institute of the National Institutes of Health under Award Number R01HG007513
+Funding: >
+ AFRI Competitive Grant no. 2010-65205-20361 from the USDA NIFA, National
+ Human Genome Research Institute of the National Institutes of Health
+ under Award Number R01HG007513
Name: khmer
Reference:
-- Author: >
- Crusoe, Michael R. and Alameldin, Hussien F. and Awad, Sherine and Bucher,
- Elmar and Caldwell, Adam and Cartwright, Reed and Charbonneau, Amanda and
- Constantinides, Bede and Edvenson, Greg and Fay, Scott and Fenton, Jacob
- and Fenzl, Thomas and Fish, Jordan and Garcia-Gutierrez, Leonor and Garland,
- Phillip and Gluck, Jonathan and González, Iván and Guermond, Sarah
- and Guo, Jiarong and Gupta, Aditi and Herr, Joshua R. and Howe, Adina and
- Hyer, Alex and Härpfer, Andreas and Irber, Luiz and Kidd, Rhys and Lin, David
- and Lippi, Justin and Mansour, Tamer and McA'Nulty, Pamela and McDonald, Eric
- and Mizzi, Jessica and Murray, Kevin D. and Nahum, Joshua R. and Nanlohy,
- Kaben and Nederbragt, Alexander Johan and Ortiz-Zuazaga, Humberto and Ory,
- Jeramia and Pell, Jason and Pepe-Ranney, Charles and Russ, Zachary N and
- Schwarz, Erich and Scott, Camille and Seaman, Josiah and Sievert, Scott and
- Simpson, Jared and Skennerton, Connor T. and Spencer, James and Srinivasan,
- Ramakrishnan and Standage, Daniel and Stapleton, James A. and Stein, Joe and
- Steinman, Susan R and Taylor, Benjamin and Trimble, Will and Wiencko, Heather
- L. and Wright, Michael and Wyss, Brian and Zhang, Qingpeng and zyme, en and
- Brown, C. Titus
- Title: "The khmer software package: enabling efficient sequence analysis"
- Publisher: F1000Research
- Year: 2015
- DOI: 10.12688/f1000research.6924.1
- URL: http://dx.doi.org/10.12688/f1000research.6924.1
- Type: article
-- Author: >
- Pell, Jason and Hintze, Arend and Canino-Koning, Rosangela and
- Howe, Adina and Tiedje, James M. and Brown, C. Titus
- title: >
- Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
- Volume: 109
- Number: 33
- Pages: 13272-13277
- Year: 2012
- DOI: 10.1073/pnas.1121464109
- Eprint: http://www.pnas.org/content/109/33/13272.full.pdf
- Journal: Proceedings of the National Academy of Sciences
- Type: article
- URL: http://www.pnas.org/content/109/33/13272
-- Author: >
- C. Titus Brown and Adina Howe and Qingpeng Zhang and Alexis B.
- Pyrkosz and Timothy H. Brom
- Title: >
- A Reference-Free Algorithm for Computational Normalization of
- Shotgun Sequencing Data
- Year: 2012
- url: http://arxiv.org/abs/1203.4802
- Eprint: http://arxiv.org/pdf/1203.4802v2
-- Author:
- Zhang, Qingpeng AND Pell, Jason AND Canino-Koning, Rosangela
- AND Howe, Adina Chuang AND Brown, C. Titus
- Journal: PLoS ONE
- Title: >
- These Are Not the K-mers You Are Looking For: Efficient Online
- K-mer Counting Using a Probabilistic Data Structure
- Year: 2014
- Month: 07
- Volume: 9
- DOI: 10.1371/journal.pone.0101271
- Number: 7
- Type: article
- Eprint: "http://www.plosone.org/article/fetchObject.action?uri=info:doi/\
- 10.1371/journal.pone.0101271&representation=PDF"
-- Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut
- Title: SeqAn An efficient, generic C++ library for sequence analysis
- Journal: BMC Bioinformatics
- Volume: 9
- Year: 2008
- Number: 1
- Pages: 11
- Type: article
- DOI: 10.1186/1471-2105-9-11
- PMID: 18184432
- ISSN: 1471-2105
-- Author: Qingpeng Zhang and Sherine Awad and C. Titus Brown
- Title: >
- Crossing the streams: a framework for streaming analysis of short DNA
- sequencing reads
- Year: 2015
- eprint: PeerJ Preprints 3:e1100
- url: https://dx.doi.org/10.7287/peerj.preprints.890v1
+ - Author: >
+ Crusoe, Michael R. and Alameldin, Hussien F. and Awad, Sherine and
+ Bucher, Elmar and Caldwell, Adam and Cartwright, Reed and Charbonneau,
+ Amanda and Constantinides, Bede and Edvenson, Greg and Fay, Scott and
+ Fenton, Jacob and Fenzl, Thomas and Fish, Jordan and Garcia-Gutierrez,
+ Leonor and Garland, Phillip and Gluck, Jonathan and González, Iván
+ and Guermond, Sarah and Guo, Jiarong and Gupta, Aditi and Herr,
+ Joshua R. and Howe, Adina and Hyer, Alex and Härpfer, Andreas and
+ Irber, Luiz and Kidd, Rhys and Lin, David and Lippi, Justin and
+ Mansour, Tamer and McA'Nulty, Pamela and McDonald, Eric and Mizzi,
+ Jessica and Murray, Kevin D. and Nahum, Joshua R. and Nanlohy, Kaben
+ and Nederbragt, Alexander Johan and Ortiz-Zuazaga, Humberto and Ory,
+ Jeramia and Pell, Jason and Pepe-Ranney, Charles and Russ, Zachary N
+ and Schwarz, Erich and Scott, Camille and Seaman, Josiah and Sievert,
+ Scott and Simpson, Jared and Skennerton, Connor T. and Spencer, James
+ and Srinivasan, Ramakrishnan and Standage, Daniel and Stapleton,
+ James A. and Stein, Joe and Steinman, Susan R and Taylor, Benjamin
+ and Trimble, Will and Wiencko, Heather L. and Wright, Michael and
+ Wyss, Brian and Zhang, Qingpeng and zyme, en and Brown, C. Titus
+ Title: >
+ The khmer software package: enabling efficient sequence analysis
+ Publisher: F1000Research
+ Year: 2015
+ DOI: 10.12688/f1000research.6924.1
+ URL: http://dx.doi.org/10.12688/f1000research.6924.1
+ Type: article
+ - Author: >
+ Pell, Jason and Hintze, Arend and Canino-Koning, Rosangela and
+ Howe, Adina and Tiedje, James M. and Brown, C. Titus
+ title: >
+ Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
+ Volume: 109
+ Number: 33
+ Pages: 13272-13277
+ Year: 2012
+ DOI: 10.1073/pnas.1121464109
+ Eprint: http://www.pnas.org/content/109/33/13272.full.pdf
+ Journal: Proceedings of the National Academy of Sciences
+ Type: article
+ URL: http://www.pnas.org/content/109/33/13272
+ - Author: >
+ C. Titus Brown and Adina Howe and Qingpeng Zhang and Alexis B.
+ Pyrkosz and Timothy H. Brom
+ Title: >
+ A Reference-Free Algorithm for Computational Normalization of
+ Shotgun Sequencing Data
+ Year: 2012
+ url: http://arxiv.org/abs/1203.4802
+ Eprint: http://arxiv.org/pdf/1203.4802v2
+ - Author:
+ Zhang, Qingpeng AND Pell, Jason AND Canino-Koning, Rosangela
+ AND Howe, Adina Chuang AND Brown, C. Titus
+ Journal: PLoS ONE
+ Title: >
+ These Are Not the K-mers You Are Looking For: Efficient Online
+ K-mer Counting Using a Probabilistic Data Structure
+ Year: 2014
+ Month: 07
+ Volume: 9
+ DOI: 10.1371/journal.pone.0101271
+ Number: 7
+ Type: article
+ Eprint: "http://www.plosone.org/article/fetchObject.action?uri=info:doi/\
+ 10.1371/journal.pone.0101271&representation=PDF"
+ - Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut
+ Title: SeqAn An efficient, generic C++ library for sequence analysis
+ Journal: BMC Bioinformatics
+ Volume: 9
+ Year: 2008
+ Number: 1
+ Pages: 11
+ Type: article
+ DOI: 10.1186/1471-2105-9-11
+ PMID: 18184432
+ ISSN: 1471-2105
+ - Author: Qingpeng Zhang and Sherine Awad and C. Titus Brown
+ Title: >
+ Crossing the streams: a framework for streaming analysis of short DNA
+ sequencing reads
+ Year: 2015
+ eprint: PeerJ Preprints 3:e1100
+ url: https://dx.doi.org/10.7287/peerj.preprints.890v1
Repository-Browse: https://github.com/dib-lab/khmer
Repository: https://github.com/dib-lab/khmer.git
Registry:
-- Name: SciCrunch
- Entry: SCR_001156
-- Name: bio.tools
- Entry: khmer
-- Name: OMICtools
- Entry: OMICS_02560
-- Name: conda:bioconda
- Entry: khmer
+ - Name: SciCrunch
+ Entry: SCR_001156
+ - Name: bio.tools
+ Entry: khmer
+ - Name: OMICtools
+ Entry: OMICS_02560
+ - Name: conda:bioconda
+ Entry: khmer
View it on GitLab: https://salsa.debian.org/med-team/khmer/commit/f378b99327ffdf3b72f6c7bd09379c5bf888fd99
--
View it on GitLab: https://salsa.debian.org/med-team/khmer/commit/f378b99327ffdf3b72f6c7bd09379c5bf888fd99
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