[med-svn] [Git][med-team/hilive][master] Documentation and autopkgtest

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / hilive


Commits:
2a3ea9a3 by Andreas Tille at 2019-10-07T13:26:26Z
Documentation and autopkgtest

- - - - -


7 changed files:

- + debian/README.test
- debian/changelog
- debian/control
- + debian/docs
- debian/rules
- + debian/tests/control
- + debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.


=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+hilive (2.0a-2) UNRELEASED; urgency=medium
+
+  * Install tutorial
+  * Provide simple autopkgtest
+  * Install documentation
+
+ -- Andreas Tille <tille at debian.org>  Mon, 07 Oct 2019 14:54:36 +0200
+
 hilive (2.0a-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/control
=====================================
@@ -13,7 +13,8 @@ Build-Depends: debhelper-compat (= 12),
                libseqan2-dev,
                zlib1g-dev,
                liblz4-dev,
-               chrpath
+               chrpath,
+               markdown
 Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/hilive
 Vcs-Git: https://salsa.debian.org/med-team/hilive.git


=====================================
debian/docs
=====================================
@@ -0,0 +1,3 @@
+debian/README.test
+debian/tests/run-unit-test
+tutorial


=====================================
debian/rules
=====================================
@@ -16,3 +16,8 @@ override_dh_auto_configure:
 override_dh_install:
 	chrpath --delete obj-$(DEB_BUILD_GNU_TYPE)/hilive*
 	dh_install
+
+override_dh_installdocs:
+	markdown README.md > README.html
+	dh_installdocs
+	rm README.html


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,21 @@
+#!/bin/bash
+set -e
+
+pkg=hilive
+
+export LC_ALL=C.UTF-8
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  # Double quote below to expand the temporary directory variable now versus
+  # later is on purpose.
+  # shellcheck disable=SC2064
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/tutorial/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+gunzip -r *
+
+mkdir -p index
+hilive-build -i hiv1.fa -o index/hiv1



View it on GitLab: https://salsa.debian.org/med-team/hilive/commit/2a3ea9a3f49a48b2fcc687f97c0f6b51e426e75f

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View it on GitLab: https://salsa.debian.org/med-team/hilive/commit/2a3ea9a3f49a48b2fcc687f97c0f6b51e426e75f
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