[med-svn] [Git][med-team/mash][upstream] New upstream version 2.2.2+dfsg

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch upstream at Debian Med / mash


Commits:
c24e551d by Sascha Steinbiss at 2019-10-23T16:39:49Z
New upstream version 2.2.2+dfsg
- - - - -


2 changed files:

- src/mash/Sketch.cpp
- src/mash/version.h


Changes:

=====================================
src/mash/Sketch.cpp
=====================================
@@ -534,17 +534,19 @@ void addMinHashes(MinHashHeap & minHashHeap, char * seq, uint64_t length, const
         reverseComplement(seq, seqRev, length);
     }
     
+    uint64_t j = 0;
+    
     for ( uint64_t i = 0; i < length - kmerSize + 1; i++ )
     {
 		// repeatedly skip kmers with bad characters
 		//
 		bool bad = false;
 		//
-		for ( uint64_t j = i; j < i + kmerSize && i + kmerSize <= length; j++ )
+		for ( ; j < i + kmerSize && i + kmerSize <= length; j++ )
 		{
 			if ( ! parameters.alphabet[seq[j]] )
 			{
-				i = j; // skip to past the bad character
+				i = j++; // skip to past the bad character
 				bad = true;
 				break;
 			}


=====================================
src/mash/version.h
=====================================
@@ -4,4 +4,4 @@
 //
 // See the LICENSE.txt file included with this software for license information.
 
-static const char * version = "2.2";
+static const char * version = "2.2.2";



View it on GitLab: https://salsa.debian.org/med-team/mash/commit/c24e551d8cc988d7536a767985075dd622ef11be

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View it on GitLab: https://salsa.debian.org/med-team/mash/commit/c24e551d8cc988d7536a767985075dd622ef11be
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