[med-svn] [Git][med-team/qiime][master] Add TODO and the dependencies that are ready

[Liubov Chuprikova]

Liubov Chuprikova pushed to branch master at Debian Med / qiime


Commits:
26011bad by Liubov Chuprikova at 2019-09-01T11:20:59Z
Add TODO and the dependencies that are ready

- - - - -


2 changed files:

- + debian/TODO
- debian/control


Changes:

=====================================
debian/TODO
=====================================
@@ -0,0 +1,61 @@
+TODO for QIIME 2
+================
+
+Plugins already accepted (added to the dependencies of qiime)
+________________________
+
+ - q2cli
+ - q2-cutadapt
+ - q2-types
+
+
+Plugins already in the NEW QUEUE
+________________________________
+
+ - q2templates
+ - q2-metadata
+ - q2-demux (was rejected: third-party script found)
+ - q2-quality-filter
+ - q2-feature-classifier
+ - q2-feature-table
+ - q2-taxa
+
+
+The work already started
+________________________
+
+ - q2-alignment:
+    TODO: SINA (what the status?)
+
+ - q2-emperor:
+    TODO: EMPEROR
+
+
+The work NOT started yet
+________________________
+
+ - q2-composition
+ 
+ - q2-sample-classifier (deps: q2-feature-table)
+
+ - q2-vsearch (deps: q2-feature-table)
+
+ - q2-dada2:
+    TODO: DADA2 (R package)
+
+ - q2-deblur:
+    TODO: Deblur
+
+ - q2-diversity (deps: q2-feature-table, q2-emperor)
+    TODO: unifrac
+
+ - q2-gneiss:
+    TODO: gneiss
+
+ - q2-longitudinal (deps: q2-feature-table, q2-sample-classifier)
+
+ - q2-phylogeny (deps: q2-alignment)
+
+ - q2-quality-control (deps: q2-taxa)
+
+ - q2-fragment-insertion (only the first release)


=====================================
debian/control
=====================================
@@ -33,7 +33,10 @@ Depends: ${shlibs:Depends},
          python3-yaml,
          python3-pyparsing,
          python3-dateutil,
-         python3-networkx
+         python3-networkx,
+         q2cli,
+         q2-cutadapt,
+         q2-types
 Description: Quantitative Insights Into Microbial Ecology
  QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
  package with a focus on data and analysis transparency. QIIME 2 enables



View it on GitLab: https://salsa.debian.org/med-team/qiime/commit/26011bad8a30343c9be5d4e8df456d58092b90ac

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View it on GitLab: https://salsa.debian.org/med-team/qiime/commit/26011bad8a30343c9be5d4e8df456d58092b90ac
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