[med-svn] [Git][med-team/virulencefinder][upstream] 2 commits: New upstream version 0.0+git20190809.dde157a

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / virulencefinder


Commits:
9c83e55a by Andreas Tille at 2019-09-02T07:37:53Z
New upstream version 0.0+git20190809.dde157a
- - - - -
683e5a79 by Andreas Tille at 2019-09-02T07:54:36Z
New upstream version 2.0.3+git20190809.dde157a
- - - - -


2 changed files:

- Dockerfile
- README.md


Changes:

=====================================
Dockerfile
=====================================
@@ -17,7 +17,7 @@ RUN apt-get update -qq; \
 ENV DEBIAN_FRONTEND Teletype
 
 # Install python dependencies
-RUN pip3 install -U biopython tabulate cgecore==1.4.2;
+RUN pip3 install -U biopython==1.73 tabulate cgecore==1.4.2;
 
 # Install kma
 RUN git clone --branch 1.0.1 --depth 1 https://bitbucket.org/genomicepidemiology/kma.git; \


=====================================
README.md
=====================================
@@ -21,7 +21,8 @@ isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and L
 
 ## Installation
 
-Setting up VirulenceFinder program
+Setting up VirulenceFinder program   
+**Warning:** Due to bugs in BioPython 1.74, if you are not using the Docker container, do not use that version if not using Python 3.7.
 ```bash
 # Go to wanted location for virulencefinder
 cd /path/to/some/dir



View it on GitLab: https://salsa.debian.org/med-team/virulencefinder/compare/79496ec401dacff79a9ae04bb70cea9dfc440224...683e5a79e0887aee5a634722b7304e2d49322338

-- 
View it on GitLab: https://salsa.debian.org/med-team/virulencefinder/compare/79496ec401dacff79a9ae04bb70cea9dfc440224...683e5a79e0887aee5a634722b7304e2d49322338
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