[med-svn] [Git][med-team/snakemake][master] 4 commits: debhelper-compat 12

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / snakemake


Commits:
7e90a816 by Andreas Tille at 2019-09-02T07:38:27Z
debhelper-compat 12

- - - - -
d4dd9968 by Andreas Tille at 2019-09-02T07:38:32Z
Standards-Version: 4.4.0

- - - - -
0d07f00d by Andreas Tille at 2019-09-02T07:41:41Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test target

- - - - -
e8198d44 by Andreas Tille at 2019-09-02T07:41:43Z
Remove obsolete fields Name, Contact from debian/upstream/metadata.
- - - - -


5 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -13,6 +13,12 @@ snakemake (5.5.4-1) UNRELEASED; urgency=medium
                   Document what is known about the skipped tests
   * Apply patch from upstream to fix duplicated argument (Closes: #933527)
 
+  [ Andreas Tille ]
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+  * Remove obsolete fields Name, Contact from debian/upstream/metadata.
+
  -- Michael R. Crusoe <michael.crusoe at gmail.com>  Wed, 31 Jul 2019 11:24:24 +0200
 
 snakemake (5.5.3-1) unstable; urgency=medium


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Kevin Murray <kdmfoss at gmail.com>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                dh-python,
                ca-certificates,
                cwltool,
@@ -35,7 +35,7 @@ Build-Depends: debhelper (>= 11~),
                python3-yaml,
                r-cran-rmarkdown
 # python3-irodsclient,  # when that enters testing
-Standards-Version: 4.3.0
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/snakemake
 Vcs-Git: https://salsa.debian.org/med-team/snakemake.git
 Homepage: https://bitbucket.org/snakemake/snakemake


=====================================
debian/rules
=====================================
@@ -34,4 +34,6 @@ override_dh_auto_build:
 		python3 setup.py build_sphinx
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	PYBUILD_SYSTEM=custom dh_auto_test
+endif


=====================================
debian/upstream/metadata
=====================================
@@ -1,16 +1,14 @@
-Contact: Johannes Köster <johannes.koester at protonmail.com>
-Name: Snakemake
 Reference:
-  - Author: Johannes Köster and Sven Rahmann
-    Title: "Snakemake-a scalable bioinformatics workflow engine "
-    Journal: Bioinformatics
-    Year: 2012
-    DOI: 10.1093/bioinformatics/bts480
-    URL: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/bts480
+- Author: Johannes Köster and Sven Rahmann
+  Title: "Snakemake-a scalable bioinformatics workflow engine "
+  Journal: Bioinformatics
+  Year: 2012
+  DOI: 10.1093/bioinformatics/bts480
+  URL: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/bts480
 Registry:
-  - Name: OMICtools
-    Entry: OMICS_02299
-  - Name: bio.tools
-    Entry: NA
-  - Name: SciCrunch
-    Entry: SCR_003475
+- Name: OMICtools
+  Entry: OMICS_02299
+- Name: bio.tools
+  Entry: NA
+- Name: SciCrunch
+  Entry: SCR_003475



View it on GitLab: https://salsa.debian.org/med-team/snakemake/compare/dbc52a27594fb0ae7f1cea2c7c37b62e2c2f54ce...e8198d44850ce964298f7c1e7aab8d44b7b662f9

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/compare/dbc52a27594fb0ae7f1cea2c7c37b62e2c2f54ce...e8198d44850ce964298f7c1e7aab8d44b7b662f9
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