[med-svn] [Git][med-team/ragout][master] Needs more work from upstream

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / ragout


Commits:
30aa65fa by Andreas Tille at 2019-09-05T09:28:40Z
Needs more work from upstream

- - - - -


1 changed file:

- debian/patches/2to3.patch


Changes:

=====================================
debian/patches/2to3.patch
=====================================
@@ -2,6 +2,45 @@ Description: Use 2to3 to port to Python3
 Bug-Debian: https://bugs.debian.org/938330
 Author: Andreas Tille <tille at debian.org>
 Last-Update: Thu, 05 Sep 2019 10:06:47 +0200
+Comment: Attention: this is not fully working.  The build runs into
+
+running build_scripts
+creating build
+creating build/scripts-3.7
+Traceback (most recent call last):
+  File "/usr/lib/python3.7/tokenize.py", line 385, in find_cookie
+    line_string = line.decode('utf-8')
+UnicodeDecodeError: 'utf-8' codec can't decode byte 0xf0 in position 24: invalid continuation byte
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "setup.py", line 43, in <module>
+    cmdclass={'build': MakeBuild}
+  File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
+    dist.run_commands()
+  File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
+    self.run_command(cmd)
+  File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
+    cmd_obj.run()
+  File "setup.py", line 28, in run
+    DistutilsBuild.run(self)
+  File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run
+    self.run_command(cmd_name)
+  File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
+    self.distribution.run_command(command)
+  File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
+    cmd_obj.run()
+  File "/usr/lib/python3.7/distutils/command/build_scripts.py", line 50, in run
+    self.copy_scripts()
+  File "/usr/lib/python3.7/distutils/command/build_scripts.py", line 82, in copy_scripts
+    encoding, lines = tokenize.detect_encoding(f.readline)
+  File "/usr/lib/python3.7/tokenize.py", line 426, in detect_encoding
+    encoding = find_cookie(first)
+  File "/usr/lib/python3.7/tokenize.py", line 390, in find_cookie
+    raise SyntaxError(msg)
+SyntaxError: invalid or missing encoding declaration for 'bin/ragout-maf2synteny'
+
 
 --- a/ragout/assembly_graph/assembly_refine.py
 +++ b/ragout/assembly_graph/assembly_refine.py



View it on GitLab: https://salsa.debian.org/med-team/ragout/commit/30aa65fa80240464d2cbd01ed8351919f3bcfa0b

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