[med-svn] [Git][med-team/vg][master] 5 commits: For the moment there is no such script run-unit-test
Andreas Tille
gitlab at salsa.debian.org
Fri Sep 6 12:20:10 BST 2019
Andreas Tille pushed to branch master at Debian Med / vg
Commits:
933ffe01 by Andreas Tille at 2019-09-06T11:11:17Z
For the moment there is no such script run-unit-test
- - - - -
943b390f by Andreas Tille at 2019-09-06T11:11:59Z
debhelper-compat 12
- - - - -
a4ee0f37 by Andreas Tille at 2019-09-06T11:13:19Z
Standards-Version: 4.4.0
- - - - -
b2ebeed9 by Andreas Tille at 2019-09-06T11:13:20Z
Remove trailing whitespace in debian/copyright
- - - - -
57db477f by Andreas Tille at 2019-09-06T11:19:07Z
Revert automatic changes of `routine-update --force` in d/changelog
- - - - -
4 changed files:
- − debian/README.test
- − debian/compat
- debian/control
- debian/copyright
Changes:
=====================================
debian/README.test deleted
=====================================
@@ -1,8 +0,0 @@
-Notes on how this package can be tested.
-────────────────────────────────────────
-
-This package can be tested by running the provided test:
-
- sh run-unit-test
-
-in order to confirm its integrity.
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -1,54 +1,52 @@
Source: vg
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <michael.crusoe at gmail.com>
-Build-Depends: debhelper (>= 11~),
+Section: science
+Priority: optional
+Build-Depends: debhelper-compat (= 12),
pv,
- pigz,
+ pigz,
bsdmainutils,
zlib1g-dev,
rs,
libffi-dev,
- bwa,
- protobuf-compiler,
- libprotoc-dev,
- libprotobuf-dev,
- libjansson-dev,
- libbz2-dev,
- libncurses5-dev,
- automake,
- libtool,
- jq,
- samtools,
- unzip,
- redland-utils,
- librdf-dev,
- cmake,
- pkg-config,
- bc,
- gtk-doc-tools,
- raptor2-utils,
- rasqal-utils,
- bison,
- flex,
- gawk,
- libgoogle-perftools-dev,
- liblz4-dev,
- liblzma-dev,
- libcairo2-dev,
- libpixman-1-dev,
- libffi-dev,
- libssw-dev,
- librocksdb-dev,
- libdeflate-dev,
+ bwa,
+ protobuf-compiler,
+ libprotoc-dev,
+ libprotobuf-dev,
+ libjansson-dev,
+ libbz2-dev,
+ libncurses5-dev,
+ automake,
+ libtool,
+ jq,
+ samtools,
+ unzip,
+ redland-utils,
+ librdf-dev,
+ cmake,
+ pkg-config,
+ bc,
+ gtk-doc-tools,
+ raptor2-utils,
+ rasqal-utils,
+ bison,
+ flex,
+ gawk,
+ libgoogle-perftools-dev,
+ liblz4-dev,
+ liblzma-dev,
+ libcairo2-dev,
+ libpixman-1-dev,
+ libssw-dev,
+ librocksdb-dev,
+ libdeflate-dev,
libboost-program-options-dev,
libjemalloc-dev,
libbackward-cpp-dev,
elfutils,
libdw-dev,
libelf-dev,
- samtools,
libraptor2-dev,
libsparsehash-dev,
rapidjson-dev,
@@ -56,17 +54,18 @@ Build-Depends: debhelper (>= 11~),
libfastahack-dev,
fastahack
# libvcflib-dev (>= 1.0),
-# libhts-dev
-# libsdsl-dev,
+# libhts-dev
+# libsdsl-dev,
# libvw-dev,
-Standards-Version: 4.2.0
+Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/vg
Vcs-Git: https://salsa.debian.org/med-team/vg.git
Homepage: https://github.com/vgteam/vg#vg
Package: vg
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
Breaks: cgvg
Description: tools for working with genome variation graphs
variation graph data structures, interchange formats, alignment, genotyping,
@@ -75,9 +74,9 @@ Description: tools for working with genome variation graphs
Variation graphs provide a succinct encoding of the sequences of many genomes.
A variation graph (in particular as implemented in vg) is composed of:
.
- - nodes, which are labeled by sequences and ids
- - edges, which connect two nodes via either of their respective ends
- - paths, describe genomes, sequence alignments, and annotations (such as gene
+ - nodes, which are labeled by sequences and ids
+ - edges, which connect two nodes via either of their respective ends
+ - paths, describe genomes, sequence alignments, and annotations (such as gene
models and transcripts) as walks through nodes connected by edges
.
This model is similar to a number of sequence graphs that have been used in
=====================================
debian/copyright
=====================================
@@ -30,7 +30,7 @@ Copyright: 2012-2015, Timo Marjoniemi
License: LGPL-2.1+
Files: ./ontology/owl2xhtml.xsl
-Copyright: 2008, Andreas Radinger and Martin Hepp, Bundeswehr University Munich, http:www.unibw.de/ebusiness/
+Copyright: 2008, Andreas Radinger and Martin Hepp, Bundeswehr University Munich, http:www.unibw.de/ebusiness/
2014, UniProt consortium, http:www.uniprot.org
2016, SIB Swiss Institute of Bioinformatics, http:www.isb-sib.ch
License: LGPL
@@ -81,4 +81,4 @@ License: MIT
COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
+
View it on GitLab: https://salsa.debian.org/med-team/vg/compare/a412850378c8855a4d683654329483351201943f...57db477fc0a080b62db9cf397cc1aeb58e13f06d
--
View it on GitLab: https://salsa.debian.org/med-team/vg/compare/a412850378c8855a4d683654329483351201943f...57db477fc0a080b62db9cf397cc1aeb58e13f06d
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