[med-svn] [Git][med-team/ariba][master] 6 commits: New upstream version 2.14.3+ds

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch master at Debian Med / ariba


Commits:
5aef8353 by Sascha Steinbiss at 2019-09-09T19:05:20Z
New upstream version 2.14.3+ds
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5e5812f3 by Sascha Steinbiss at 2019-09-09T19:05:25Z
Merge tag 'upstream/2.14.3+ds'

Upstream version 2.14.3+ds

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54f29ae6 by Sascha Steinbiss at 2019-09-09T19:38:27Z
new upstream release

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8c0a4057 by Sascha Steinbiss at 2019-09-09T19:38:37Z
bump Standards-Version

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f79d612e by Sascha Steinbiss at 2019-09-09T19:38:54Z
use debhelper 12

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04ceb2c3 by Sascha Steinbiss at 2019-09-09T19:39:25Z
update and add headers to patches

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30 changed files:

- CHANGELOG.md
- Dockerfile
- ariba/ref_preparer.py
- ariba/reference_data.py
- ariba/tasks/prepareref.py
- + ariba/tests/data/ref_preparer_test_run.in.4.fa
- + ariba/tests/data/ref_preparer_test_run.in.4.tsv
- ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log
- + ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log
- + ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa
- + ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log
- + ariba/tests/data/reference_data_remove_bad_noncoding.in.fa
- + ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv
- + ariba/tests/data/reference_data_test_remove_bad_noncoding.log
- ariba/tests/ref_preparer_test.py
- ariba/tests/reference_data_test.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ariba/compare/7352d03c0a6b9716520bcc18aa8dae1f31ccbba8...04ceb2c3066e49b2ea231a719f88987a068b3970

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View it on GitLab: https://salsa.debian.org/med-team/ariba/compare/7352d03c0a6b9716520bcc18aa8dae1f31ccbba8...04ceb2c3066e49b2ea231a719f88987a068b3970
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