[med-svn] [Git][med-team/beagle][master] 6 commits: Update changelogs

[Dylan Aïssi]

Dylan Aïssi pushed to branch master at Debian Med / beagle


Commits:
62500e0b by Dylan Aïssi at 2019-09-09T20:06:11Z
Update changelogs

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9ea91de8 by Dylan Aïssi at 2019-09-09T20:06:42Z
New upstream version 5.1-190824+dfsg
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3813c4d3 by Dylan Aïssi at 2019-09-09T20:06:43Z
Update upstream source from tag 'upstream/5.1-190824+dfsg'

Update to upstream version '5.1-190824+dfsg'
with Debian dir c9262ec484b358ca77507e11f85003f3f04a9b0f
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0e95f1cc by Dylan Aïssi at 2019-09-09T20:07:43Z
Update d/s/include-binaries

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6b5341ef by Dylan Aïssi at 2019-09-09T20:10:45Z
Refresh patch

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cf582856 by Dylan Aïssi at 2019-09-09T20:19:22Z
Remove folders not used

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30 changed files:

- beagleutil/ChromInterval.java
- beagleutil/IntInterval.java
- + beagleutil/PbwtUpdater.java
- haplotype/HapPair.java → blbutil/DoubleArray.java
- blbutil/FloatArray.java
- blbutil/InputIt.java
- blbutil/Utilities.java
- bref/Bref3Reader.java
- bref/SeqCoder3.java
- debian/beagle-doc.doc-base
- debian/beagle-doc.install
- debian/changelog
- debian/patches/01_Update_htsjtk.patch
- debian/rules
- debian/source/include-binaries
- debian/upstream.docs/README
- debian/upstream.docs/beagle_5.0.pdf → debian/upstream.docs/beagle_5.1.pdf
- debian/upstream.docs/release_notes
- debian/upstream.docs/run.beagle.example
- − haplotype/BitHapPair.java
- − haplotype/WrappedHapPair.java
- + imp/CodedSteps.java
- imp/HaplotypeCoder.java
- imp/ImpData.java
- imp/ImpIbs.java
- imp/ImpLSBaum.java
- imp/ImpStates.java
- imp/ImputedVcfWriter.java
- imp/RefHapHash.java
- ints/IntArray.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beagle/compare/e2876f35d59fc6302aa69bd6d1f14861fd796016...cf58285635b69dd4fa88af05342c88db299a4e51

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View it on GitLab: https://salsa.debian.org/med-team/beagle/compare/e2876f35d59fc6302aa69bd6d1f14861fd796016...cf58285635b69dd4fa88af05342c88db299a4e51
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