[med-svn] [Git][med-team/lefse][master] Some unit test refinements

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / lefse


Commits:
6883422d by Shayan Doust at 2019-09-11T16:22:58Z
Some unit test refinements

- - - - -


1 changed file:

- debian/tests/run-unit-test


Changes:

=====================================
debian/tests/run-unit-test
=====================================
@@ -4,18 +4,20 @@ set -e
 # Run comparative tests to see if we get an expected default output. Test installed files so no need to move them.
 
 # run_lefse
-if [[ $(run_lefse 2>&1) = "usage: run_lefse [-h]"* ]]; then
+if [[ $(run_lefse -h 2>&1) = "usage: run_lefse [-h]"* ]]; then
 	echo "run_lefse comparative pass"
 else
-	echo "run_lefse comparative fail"
+	echo "run_lefse comparative fail. Instead, I get:"
+	run_lefse -h
 	exit 1
 fi
 
 # format_input
-if [[ $(format_input 2>&1) = "usage: format_input [-h]"* ]]; then
+if [[ $(format_input -h 2>&1) = "usage: format_input [-h]"* ]]; then
 	echo "format_input comparative pass"
 else
-	echo "format_input comparative fail"
+	echo "format_input comparative fail. Instead, I get:"
+	format_input -h
 	exit 1
 fi 
 
@@ -23,31 +25,35 @@ fi
 if [[ $(lefse2circlader -h 2>&1) = "usage: lefse2circlader [-h]"* ]]; then
 	echo "lefse2circlader comparative pass"
 else
-	echo "lefse2circlader comparative fail"
+	echo "lefse2circlader comparative fail. Instead, I get:"
+	lefse2circlader -h
 	exit 1
 fi
 
 # plot_cladogram
-if [[ $(plot_cladogram 2>&1) = "usage: plot_cladogram [-h]"* ]]; then
+if [[ $(plot_cladogram -h 2>&1) = "usage: plot_cladogram [-h]"* ]]; then
 	echo "plot_cladogram comparative pass"
 else
-	echo "plot_cladogram comparative fail"
+	echo "plot_cladogram comparative fail. Instead, I get:"
+	plot_cladogram -h
 	exit 1
 fi
 
 # plot_features
-if [[ $(plot_features 2>&1) = "usage: plot_features [-h]"* ]]; then
+if [[ $(plot_features -h 2>&1) = "usage: plot_features [-h]"* ]]; then
 	echo "plot_features comparative pass"
 else
-	echo "plot_features comparative fail"
+	echo "plot_features comparative fail. Instead, I get:"
+	plot_features -h
 	exit 1
 fi
 
 # plo_res
-if [[ $(plot_res 2>&1) = "usage: plot_res [-h]"* ]]; then
+if [[ $(plot_res -h 2>&1) = "usage: plot_res [-h]"* ]]; then
 	echo "plot_res comparative pass"
 else
-	echo "plot_res comparative fail"
+	echo "plot_res comparative fail. Instead, I get:"
+	plot_res -h
 	exit 1
 fi
 
@@ -55,6 +61,7 @@ fi
 if [[ $(qiime2lefse -h 2>&1) = "usage: qiime2lefse [-h]"* ]]; then
 	echo "qiime2lefse comparative pass"
 else
-	echo "qiime2lefse comparative fail"
+	echo "qiime2lefse comparative fail. Instead, I get:"
+	qiime2lefse -h
 	exit 1
 fi



View it on GitLab: https://salsa.debian.org/med-team/lefse/commit/6883422d54a8e8ce52ac0ecd1954cc659b89e4dd

-- 
View it on GitLab: https://salsa.debian.org/med-team/lefse/commit/6883422d54a8e8ce52ac0ecd1954cc659b89e4dd
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