[med-svn] [Git][med-team/simka][master] Replace shebang for python3

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / simka


Commits:
54405f07 by Shayan Doust at 2019-09-12T03:21:44Z
Replace shebang for python3

- - - - -


1 changed file:

- debian/patches/2to3.patch


Changes:

=====================================
debian/patches/2to3.patch
=====================================
@@ -1,8 +1,14 @@
-diff --git a/simkaMin/simkaMin.py b/simkaMin/simkaMin.py
-index 320d6e2..c0fa28d 100755
---- a/simkaMin/simkaMin.py
-+++ b/simkaMin/simkaMin.py
-@@ -69,7 +69,7 @@ simkaMinCoreBin=args.bin
+Index: simka/simkaMin/simkaMin.py
+===================================================================
+--- simka.orig/simkaMin/simkaMin.py	2019-09-12 04:15:09.951278183 +0100
++++ simka/simkaMin/simkaMin.py	2019-09-12 04:15:39.035180723 +0100
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python
++#!/usr/bin/python3
+ #*****************************************************************************
+ #   SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets
+ #   A tool from the GATB (Genome Assembly Tool Box)
+@@ -69,7 +69,7 @@
  if args.bin is not None:
      # given by the user
      if not is_executable(simkaMinCoreBin):
@@ -11,17 +17,23 @@ index 320d6e2..c0fa28d 100755
          exit(1)
  else:
      # Check if is in the PATH
-@@ -198,4 +198,4 @@ ret = os.system(exportCommand)
+@@ -198,4 +198,4 @@
  if ret != 0: print("ERROR"); exit(1)
  
  print("\n\n")
 -print("Result dir: " + args.out)
 +print(("Result dir: " + args.out))
-diff --git a/simkaMin/simkaMin_update.py b/simkaMin/simkaMin_update.py
-index 99968d0..c5bc0ad 100755
---- a/simkaMin/simkaMin_update.py
-+++ b/simkaMin/simkaMin_update.py
-@@ -67,7 +67,7 @@ simkaMinCoreBin=args.bin
+Index: simka/simkaMin/simkaMin_update.py
+===================================================================
+--- simka.orig/simkaMin/simkaMin_update.py	2019-09-12 04:15:09.951278183 +0100
++++ simka/simkaMin/simkaMin_update.py	2019-09-12 04:15:49.975144063 +0100
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python
++#!/usr/bin/python3
+ 
+ #*****************************************************************************
+ #   SimkaMin: Fast kmer-based method for estimating the similarity between numerous metagenomic datasets
+@@ -67,7 +67,7 @@
  if args.bin is not None:
      # given by the user
      if not is_executable(simkaMinCoreBin):
@@ -30,7 +42,7 @@ index 99968d0..c5bc0ad 100755
          exit(1)
  else:
      # Check if is in the PATH
-@@ -219,4 +219,4 @@ shutil.rmtree(distanceDir_newVsNew)
+@@ -219,4 +219,4 @@
  os.remove(sketchFilename_new)
  
  print("\n\n")



View it on GitLab: https://salsa.debian.org/med-team/simka/commit/54405f07fed643180d6d169755d68ebcf2d0868b

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View it on GitLab: https://salsa.debian.org/med-team/simka/commit/54405f07fed643180d6d169755d68ebcf2d0868b
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