[med-svn] [Git][med-team/phyx][master] Push patch hunk fix & changelog

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / phyx


Commits:
b9a2b52c by Shayan Doust at 2019-09-13T01:55:22Z
Push patch hunk fix & changelog

- - - - -


3 changed files:

- debian/changelog
- debian/patches/2to3.patch
- debian/patches/link_lnlopt.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,9 +1,13 @@
-phyx (0.999+ds-3) UNRELEASED; urgency=medium
+phyx (1.0+ds-1) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Install Phyx_Gui
   * Provide README.test to explain how to run test suite as user example
 
- -- Andreas Tille <tille at debian.org>  Wed, 11 Sep 2019 22:17:54 +0200
+  [ Shayan Doust ]
+  * New upstream release
+
+ -- Shayan Doust <hello at shayandoust.me>  Fri, 13 Sep 2019 02:47:52 +0100
 
 phyx (0.999+ds-2) unstable; urgency=medium
 


=====================================
debian/patches/2to3.patch
=====================================
The diff for this file was not included because it is too large.

=====================================
debian/patches/link_lnlopt.patch
=====================================
@@ -2,9 +2,11 @@ Author: Andreas Tille <tille at debian.org>
 Last-Update: Sat, 08 Sep 2018 22:16:39 +0200
 Description: Somehow nlopt library needs to be added
 
---- a/src/Makefile.in
-+++ b/src/Makefile.in
-@@ -339,7 +339,7 @@ all: $(PROGS)
+Index: phyx/src/Makefile.in
+===================================================================
+--- phyx.orig/src/Makefile.in	2019-09-13 02:53:04.813581389 +0100
++++ phyx/src/Makefile.in	2019-09-13 02:53:04.809581405 +0100
+@@ -343,7 +343,7 @@
  
  pxstrec: $(CPP_OBJS) $(RATE_OBJS) $(STREC_OBJ) #$(FORT_OBJS)
  	@echo 'building pxstrec'
@@ -13,7 +15,7 @@ Description: Somehow nlopt library needs to be added
  
  pxmrca: $(CPP_OBJS) $(MRCA_OBJ)
  	@echo 'building pxmrca'
-@@ -443,7 +443,7 @@ pxboot: $(CPP_OBJS) $(SEQSAMP_OBJ)
+@@ -447,7 +447,7 @@
  
  pxseqgen: $(CPP_OBJS) $(RATE_OBJS) $(SEQGEN_OBJ) $(FORT_OBJS)
  	@echo 'building pxseqgen'
@@ -22,7 +24,7 @@ Description: Somehow nlopt library needs to be added
  
  pxcat: $(CPP_OBJS) $(CONCAT_OBJ)
  	@echo 'building pxcat'
-@@ -463,7 +463,7 @@ pxvcf2fa: $(CPP_OBJS) $(VCF2FA_OBJ)
+@@ -467,7 +467,7 @@
  
  pxcontrates: $(CPP_OBJS) $(CONTRATES_OBJ) $(RATE_OBJS)
  	@echo 'building pxcontrates'



View it on GitLab: https://salsa.debian.org/med-team/phyx/commit/b9a2b52cdb3de5b99ea0f8215728eb8df00334d3

-- 
View it on GitLab: https://salsa.debian.org/med-team/phyx/commit/b9a2b52cdb3de5b99ea0f8215728eb8df00334d3
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