[med-svn] [Git][med-team/simka][master] Install test directory and fix test paths

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / simka


Commits:
6b29d4b4 by Shayan Doust at 2019-09-13T03:27:33Z
Install test directory and fix test paths

- - - - -


3 changed files:

- debian/patches/fix_test_path.patch
- debian/rules
- debian/simka.install


Changes:

=====================================
debian/patches/fix_test_path.patch
=====================================
@@ -5,8 +5,8 @@ Last-Update: 2019-09-13
 
 Index: simka/tests/simkaMin/test_simkaMin.py
 ===================================================================
---- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 00:54:35.331977272 +0100
-+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 00:54:35.327977295 +0100
+--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.362188349 +0100
++++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.358188366 +0100
 @@ -48,7 +48,7 @@
              for nb_reads in NB_READS:
                  for nb_kmers in NB_KMERS:
@@ -74,8 +74,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py
              if ret != 0: exit(1)
 Index: simka/tests/simple_test.py
 ===================================================================
---- simka.orig/tests/simple_test.py	2019-09-13 00:54:35.331977272 +0100
-+++ simka/tests/simple_test.py	2019-09-13 00:54:35.327977295 +0100
+--- simka.orig/tests/simple_test.py	2019-09-13 04:26:28.362188349 +0100
++++ simka/tests/simple_test.py	2019-09-13 04:26:28.358188366 +0100
 @@ -91,7 +91,7 @@
  #test k=31 t=0
  clear()
@@ -124,3 +124,36 @@ Index: simka/tests/simple_test.py
  os.system(command + suffix)
  test_parallelization()
  
+Index: simka/example/simple_test.sh
+===================================================================
+--- simka.orig/example/simple_test.sh	2019-09-12 22:31:11.297235515 +0100
++++ simka/example/simple_test.sh	2019-09-13 04:27:15.069993869 +0100
+@@ -3,17 +3,17 @@
+ 
+ # look for simka binary. In devel mode, it's in ../build/bin directory.
+ # In production mode, it's in ../bin directory.
+-if [ -f "../bin/simka" ]
+-then
+- bindir="../bin"
+-elif [ -f "../build/bin/simka" ]
+-then
+- bindir="../build/bin"
+-else
+- echo "could not find a compiled simka binary"
+- exit 1
+-fi
+-
++#if [ -f "../bin/simka" ]
++#then
++# bindir="../bin"
++#elif [ -f "../build/bin/simka" ]
++#then
++# bindir="../build/bin"
++#else
++# echo "could not find a compiled simka binary"
++# exit 1
++#fi
++bindir="/usr/bin"
+ # run simka
+ command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"
+ #printf "$command\n\n"


=====================================
debian/rules
=====================================
@@ -21,6 +21,7 @@ override_dh_install:
 override_dh_fixperms:
 	dh_fixperms
 	chmod +x debian/*/usr/bin/*
+	chmod -x debian/simkamin/usr/bin/simkaMin_utils.py
 
 override_dh_installman:
 	dh_installman


=====================================
debian/simka.install
=====================================
@@ -3,3 +3,4 @@ debian/mans/simka.1 usr/share/man/man1
 debian/mans/simkaCount.1 usr/share/man/man1
 debian/mans/simkaCountProcess.1 usr/share/man/man1
 debian/mans/simkaMerge.1 usr/share/man/man1
+example usr/share/doc/simka



View it on GitLab: https://salsa.debian.org/med-team/simka/commit/6b29d4b4250fe9fe5cd81ea37502145f99b96082

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View it on GitLab: https://salsa.debian.org/med-team/simka/commit/6b29d4b4250fe9fe5cd81ea37502145f99b96082
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