[med-svn] [Git][med-team/simka][master] First section of autopkgtest

[Shayan Doust]

Shayan Doust pushed to branch master at Debian Med / simka


Commits:
c1cb0694 by Shayan Doust at 2019-09-13T05:26:21Z
First section of autopkgtest
Tests simka but need to also test simkaMin

- - - - -


2 changed files:

- debian/patches/fix_test_path.patch
- debian/tests/run-unit-test


Changes:

=====================================
debian/patches/fix_test_path.patch
=====================================
@@ -5,8 +5,8 @@ Last-Update: 2019-09-13
 
 Index: simka/tests/simkaMin/test_simkaMin.py
 ===================================================================
---- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.362188349 +0100
-+++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 04:26:28.358188366 +0100
+--- simka.orig/tests/simkaMin/test_simkaMin.py	2019-09-13 06:19:47.190416943 +0100
++++ simka/tests/simkaMin/test_simkaMin.py	2019-09-13 06:19:47.186416959 +0100
 @@ -48,7 +48,7 @@
              for nb_reads in NB_READS:
                  for nb_kmers in NB_KMERS:
@@ -74,8 +74,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py
              if ret != 0: exit(1)
 Index: simka/tests/simple_test.py
 ===================================================================
---- simka.orig/tests/simple_test.py	2019-09-13 04:26:28.362188349 +0100
-+++ simka/tests/simple_test.py	2019-09-13 04:26:28.358188366 +0100
+--- simka.orig/tests/simple_test.py	2019-09-13 06:19:47.190416943 +0100
++++ simka/tests/simple_test.py	2019-09-13 06:19:47.186416959 +0100
 @@ -91,7 +91,7 @@
  #test k=31 t=0
  clear()
@@ -126,9 +126,9 @@ Index: simka/tests/simple_test.py
  
 Index: simka/example/simple_test.sh
 ===================================================================
---- simka.orig/example/simple_test.sh	2019-09-12 22:31:11.297235515 +0100
-+++ simka/example/simple_test.sh	2019-09-13 04:27:15.069993869 +0100
-@@ -3,17 +3,17 @@
+--- simka.orig/example/simple_test.sh	2019-09-13 06:19:47.190416943 +0100
++++ simka/example/simple_test.sh	2019-09-13 06:20:36.106219416 +0100
+@@ -3,19 +3,19 @@
  
  # look for simka binary. In devel mode, it's in ../build/bin directory.
  # In production mode, it's in ../bin directory.
@@ -155,5 +155,8 @@ Index: simka/example/simple_test.sh
 +#fi
 +bindir="/usr/bin"
  # run simka
- command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"
+-command="$bindir/simka -in ../example/simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"
++command="$bindir/simka -in simka_input.txt -out ./simka_results/ -out-tmp ./simka_temp_output"
  #printf "$command\n\n"
+ 
+ # DO NOT add lines between '$command' exec and 'var...' !


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,18 +1,17 @@
 #!/bin/bash
 set -e
 
-pkg=#PACKAGENAME#
+pkg=simka
 
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  # Double quote below to expand the temporary directory variable now versus
-  # later is on purpose.
   # shellcheck disable=SC2064
   trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+cp -a /usr/share/doc/${pkg}/example/* "${AUTOPKGTEST_TMP}"
 
 cd "${AUTOPKGTEST_TMP}"
+gunzip *.gz
 
-#do_stuff_to_test_package#
+bash simple_test.sh



View it on GitLab: https://salsa.debian.org/med-team/simka/commit/c1cb069486ba11ac26a151ba6b9c8312a79b609b

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View it on GitLab: https://salsa.debian.org/med-team/simka/commit/c1cb069486ba11ac26a151ba6b9c8312a79b609b
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