[med-svn] [Git][med-team/beagle][master] 2 commits: Fix autopkgtest tests

[Dylan Aïssi]

Dylan Aïssi pushed to branch master at Debian Med / beagle


Commits:
75eb643c by Dylan Aïssi at 2019-09-13T15:56:11Z
Fix autopkgtest tests

- - - - -
3db4863d by Dylan Aïssi at 2019-09-13T19:19:30Z
Upload to unstable

- - - - -


2 changed files:

- debian/changelog
- debian/tests/run-sample-analysis


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+beagle (5.1-190824+dfsg-2) unstable; urgency=medium
+
+  * Fix autopkgtest tests.
+
+ -- Dylan Aïssi <daissi at debian.org>  Fri, 13 Sep 2019 21:18:50 +0200
+
 beagle (5.1-190824+dfsg-1) unstable; urgency=medium
 
   * New upstream release.


=====================================
debian/tests/run-sample-analysis
=====================================
@@ -14,6 +14,7 @@ cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP
 BEAGLE_TEST='java -jar /usr/share/beagle/beagle.jar'
 
 # Generate necessary files
+gzip test.vcf
 zcat test.vcf.gz | cut -f1-190 | tr '/' '|' | gzip > ref.vcf.gz
 zcat test.vcf.gz | cut -f1-9,191-200 | gzip > target.vcf.gz
 java -jar /usr/share/beagle/bref3.jar ref.vcf.gz > ref.bref3



View it on GitLab: https://salsa.debian.org/med-team/beagle/compare/f052ab3485c2cdcdd6d9906b5c40c5430111f0a3...3db4863db6c335767b40bb15557284a9b0ce17d4

-- 
View it on GitLab: https://salsa.debian.org/med-team/beagle/compare/f052ab3485c2cdcdd6d9906b5c40c5430111f0a3...3db4863db6c335767b40bb15557284a9b0ce17d4
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