[med-svn] [Git][med-team/diamond-aligner][master] Uploaded to unstable.

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / diamond-aligner


Commits:
e83bc042 by Steffen Moeller at 2019-09-21T09:42:39Z
Uploaded to unstable.

- - - - -


3 changed files:

- debian/changelog
- debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch
- debian/patches/no_march_native.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-diamond-aligner (0.9.26+dfsg-1) UNRELEASED; urgency=medium
+diamond-aligner (0.9.26+dfsg-1) unstable; urgency=medium
 
   * Team upload.
   * New upstream version


=====================================
debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch
=====================================
@@ -7,16 +7,16 @@ Subject: [PATCH] Fixed #295.
  src/dp/needleman_wunsch.cpp | 2 +-
  1 file changed, 1 insertion(+), 1 deletion(-)
 
-diff --git a/src/dp/needleman_wunsch.cpp b/src/dp/needleman_wunsch.cpp
-index abb47bb..2050eea 100644
---- a/src/dp/needleman_wunsch.cpp
-+++ b/src/dp/needleman_wunsch.cpp
-@@ -167,7 +167,7 @@ const Fixed_score_buffer<_score>& needleman_wunsch(sequence query, sequence subj
+Index: diamond-aligner/src/dp/needleman_wunsch.cpp
+===================================================================
+--- diamond-aligner.orig/src/dp/needleman_wunsch.cpp
++++ diamond-aligner/src/dp/needleman_wunsch.cpp
+@@ -167,7 +167,7 @@ const Fixed_score_buffer<_score>& needle
  	return mtx.score_buffer();
  }
  
--template const Fixed_score_buffer<int>& needleman_wunsch(sequence query, sequence subject, int &max_score, const Local&, const int&);
-+// template const Fixed_score_buffer<int>& needleman_wunsch(sequence query, sequence subject, int &max_score, const Local&, const int&);
+-template const Fixed_score_buffer<int>& needleman_wunsch<int, Local>(sequence query, sequence subject, int &max_score, const Local&, const int&);
++//template const Fixed_score_buffer<int>& needleman_wunsch<int, Local>(sequence query, sequence subject, int &max_score, const Local&, const int&);
  
  int needleman_wunsch(sequence query, sequence subject, int qbegin, int qend, int sbegin, int send, unsigned node, unsigned edge, Diag_graph &diags, bool log)
  {


=====================================
debian/patches/no_march_native.patch
=====================================
@@ -3,9 +3,11 @@ Bug-Debian: https://bugs.debian.org/906615
 Author: Andreas Tille <tille at debian.org>
 Last-Update: Sun, 19 Aug 2018 06:38:58 +0200
 
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -14,10 +14,10 @@ if(CMAKE_BUILD_MARCH)
+Index: diamond-aligner/CMakeLists.txt
+===================================================================
+--- diamond-aligner.orig/CMakeLists.txt
++++ diamond-aligner/CMakeLists.txt
+@@ -38,10 +38,10 @@ elseif(CMAKE_BUILD_MARCH)
    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=${CMAKE_BUILD_MARCH}")
  else()
    include(CheckCXXCompilerFlag)



View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/commit/e83bc042658f3d3f3b7dbf80a84069a0dc4bfc35

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View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/commit/e83bc042658f3d3f3b7dbf80a84069a0dc4bfc35
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