Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
bd834f6d by Andreas Tille at 2020-04-04T13:45:00+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,23 +1,23 @@
-Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
+Last-Update: Sat, 04 Apr 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 161 | {covid-19,imaging} |
- orthanc | 93 | {covid-19,practice,imaging} |
- gdcm | 51 | {imaging-dev} |
- orthanc-wsi | 39 | {practice,covid-19,laboratory,his,oncology,imaging} |
+ dcmtk | 160 | {imaging,covid-19} |
+ orthanc | 92 | {practice,imaging,covid-19} |
+ gdcm | 50 | {imaging-dev} |
+ orthanc-wsi | 39 | {covid-19,his,practice,oncology,imaging,laboratory} |
htsjdk | 31 | {bio-dev} |
amide | 30 | {imaging} |
dcm2niix | 27 | {imaging} |
dicomscope | 25 | {imaging} |
- dicom3tools | 23 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
- gnumed-server | 17 | {practice,covid-19} |
+ dicom3tools | 24 | {imaging} |
+ gdcm | 21 | {imaging,covid-19} |
minc-tools | 17 | {imaging} |
ngs-sdk | 17 | {bio-dev} |
+ gnumed-server | 16 | {practice,covid-19} |
+ king | 15 | {typesetting,imaging} |
pixelmed | 15 | {imaging} |
invesalius | 14 | {imaging} |
- king | 14 | {typesetting,imaging} |
ncbi-entrez-direct | 14 | {bio} |
biojava-live | 13 | {bio-dev} |
vtk-dicom | 13 | {imaging} |
@@ -27,76 +27,77 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
adun.app | 11 | {bio} |
cgview | 11 | {bio} |
jebl2 | 11 | {bio-dev} |
- psychopy | 11 | {psychology} |
staden | 11 | {bio} |
+ biosig4c++ | 10 | {imaging,physics} |
ea-utils | 10 | {bio} |
- plastimatch | 10 | {imaging} |
+ king-probe | 10 | {bio} |
+ psychopy | 10 | {psychology} |
radiant | 10 | {bio} |
dazzdb | 9 | {bio} |
- diamond-aligner | 9 | {covid-19,bio} |
- king-probe | 9 | {bio} |
+ diamond-aligner | 9 | {bio,covid-19} |
+ gasic | 9 | {cloud,bio} |
mipe | 9 | {cloud,bio} |
ngs-sdk | 9 | {bio-dev} |
- obitools | 9 | {bio} |
+ plastimatch | 9 | {imaging} |
seqsero | 9 | {bio} |
- tree-puzzle | 9 | {bio-phylogeny,cloud,bio} |
- biosig4c++ | 8 | {imaging,physics} |
+ tree-puzzle | 9 | {cloud,bio,bio-phylogeny} |
bppsuite | 8 | {bio} |
fastlink | 8 | {cloud,bio} |
- gasic | 8 | {cloud,bio} |
+ fitgcp | 8 | {bio,cloud} |
gdcm | 8 | {imaging-dev} |
- librg-utils-perl | 8 | {bio} |
norsp | 8 | {bio} |
+ obitools | 8 | {bio} |
phast | 8 | {bio} |
prime-phylo | 8 | {cloud,bio} |
- sigma-align | 8 | {bio,cloud,bio-phylogeny} |
+ sigma-align | 8 | {cloud,bio-phylogeny,bio} |
abacas | 7 | {bio} |
- ampliconnoise | 7 | {cloud,bio} |
- anfo | 7 | {bio,cloud} |
- arden | 7 | {cloud,bio} |
+ alter-sequence-alignment | 7 | {bio} |
+ ampliconnoise | 7 | {bio,cloud} |
+ anfo | 7 | {cloud,bio} |
+ arden | 7 | {bio,cloud} |
biomaj3-cli | 7 | {cloud} |
- daligner | 7 | {bio-ngs,bio} |
+ daligner | 7 | {bio,bio-ngs} |
ecopcr | 7 | {bio} |
- embassy-domainatrix | 7 | {bio,cloud} |
+ embassy-domainatrix | 7 | {cloud,bio} |
embassy-domsearch | 7 | {bio,cloud} |
- fitgcp | 7 | {cloud,bio} |
- freecontact | 7 | {bio,cloud} |
+ freecontact | 7 | {cloud,bio} |
hunspell-en-med | 7 | {tools} |
- jaligner | 7 | {bio} |
+ librg-utils-perl | 7 | {bio} |
maqview | 7 | {bio} |
ncbi-seg | 7 | {bio} |
- neobio | 7 | {bio,cloud} |
- phyutility | 7 | {cloud,bio} |
+ neobio | 7 | {cloud,bio} |
+ phyutility | 7 | {bio,cloud} |
piler | 7 | {bio} |
+ placnet | 7 | {bio} |
pscan-tfbs | 7 | {bio} |
+ rambo-k | 7 | {bio} |
+ rdp-readseq | 7 | {bio} |
saint | 7 | {bio} |
- sibsim4 | 7 | {cloud,bio} |
- alter-sequence-alignment | 6 | {bio} |
+ sibsim4 | 7 | {bio,cloud} |
+ biomaj3-daemon | 6 | {bio} |
bio-tradis | 6 | {bio-dev,bio} |
bitseq | 6 | {bio} |
+ clonalframeml | 6 | {covid-19,bio} |
codonw | 6 | {bio} |
edtsurf | 6 | {bio} |
embassy-domalign | 6 | {cloud,bio} |
estscan | 6 | {bio} |
freebayes | 6 | {bio} |
+ jaligner | 6 | {bio} |
lagan | 6 | {bio} |
lamarc | 6 | {bio} |
lucy | 6 | {bio} |
melting | 6 | {bio,cloud} |
microbegps | 6 | {bio} |
mlv-smile | 6 | {cloud,bio} |
- openslide | 6 | {imaging-dev} |
orthanc-webviewer | 6 | {imaging} |
paml | 6 | {bio} |
paraclu | 6 | {cloud,bio} |
parsnp | 6 | {bio} |
- perm | 6 | {bio,cloud} |
- placnet | 6 | {bio} |
+ perm | 6 | {cloud,bio} |
poretools | 6 | {bio} |
probabel | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
- rambo-k | 6 | {bio} |
- rdp-readseq | 6 | {bio} |
salmon | 6 | {bio} |
scythe | 6 | {bio} |
seqtools | 6 | {bio} |
@@ -110,12 +111,10 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
bandage | 5 | {bio} |
beads | 5 | {bio} |
beast2-mcmc | 5 | {bio} |
- biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
brig | 5 | {bio} |
canu | 5 | {bio} |
centrifuge | 5 | {bio} |
- clonalframeml | 5 | {covid-19,bio} |
clonalorigin | 5 | {bio} |
cluster3 | 5 | {bio} |
dascrubber | 5 | {bio} |
@@ -127,26 +126,27 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
- libminc | 5 | {imaging-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
logol | 5 | {bio} |
mapsembler2 | 5 | {bio,cloud} |
mauve-aligner | 5 | {bio} |
murasaki | 5 | {bio} |
+ openslide | 5 | {imaging-dev} |
predictprotein | 5 | {bio} |
- proalign | 5 | {bio,bio-phylogeny} |
+ proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
quorum | 5 | {bio} |
+ rdp-alignment | 5 | {bio} |
rdp-classifier | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
- samblaster | 5 | {covid-19,bio} |
+ samblaster | 5 | {bio,covid-19} |
seer | 5 | {bio} |
seqtools | 5 | {bio} |
sprai | 5 | {bio} |
sumatra | 5 | {bio} |
transtermhp | 5 | {bio} |
vsearch | 5 | {bio} |
- zalign | 5 | {bio,cloud} |
+ zalign | 5 | {cloud,bio} |
assemblytics | 4 | {bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
@@ -154,31 +154,34 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
elastix | 4 | {imaging} |
fastml | 4 | {bio} |
hinge | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
+ libminc | 4 | {imaging-dev} |
libncl | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
- libsbml | 4 | {bio-dev} |
maffilter | 4 | {bio} |
mhap | 4 | {bio,bio-ngs} |
mptp | 4 | {bio} |
- mrs | 4 | {bio} |
patman | 4 | {bio} |
phipack | 4 | {bio} |
prottest | 4 | {bio,bio-phylogeny} |
rampler | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
relion | 4 | {bio} |
roguenarok | 4 | {bio} |
+ seqmagick | 4 | {covid-19,bio} |
sga | 4 | {bio} |
soapsnp | 4 | {bio} |
+ stacks | 4 | {bio} |
sweed | 4 | {bio} |
+ tnseq-transit | 4 | {bio,covid-19} |
tvc | 4 | {bio} |
blasr | 3 | {bio,bio-ngs} |
delly | 3 | {bio,covid-19} |
dicompyler | 3 | {oncology} |
dindel | 3 | {bio} |
fsm-lite | 3 | {bio} |
+ libsbml | 3 | {bio-dev} |
metaphlan2 | 3 | {bio} |
+ mrs | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
orthanc-dicomweb | 3 | {covid-19,imaging} |
orthanc-mysql | 3 | {imaging} |
@@ -189,47 +192,41 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
relion | 3 | {bio} |
rtax | 3 | {bio,cloud} |
runcircos-gui | 3 | {bio} |
- seqmagick | 3 | {bio,covid-19} |
snap-aligner | 3 | {bio} |
soapaligner | 3 | {bio} |
- stacks | 3 | {bio} |
suitename | 3 | {bio} |
sumaclust | 3 | {bio,covid-19} |
surankco | 3 | {bio} |
- tnseq-transit | 3 | {bio,covid-19} |
transrate-tools | 3 | {bio} |
varscan | 3 | {bio} |
velvetoptimiser | 3 | {bio} |
yaha | 3 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
cufflinks | 2 | {cloud,bio} |
getdata | 2 | {bio} |
igor | 2 | {bio} |
kma | 2 | {bio} |
kmerresistance | 2 | {bio} |
+ libchado-perl | 2 | {bio-dev} |
libgff | 2 | {bio-dev} |
libsmithwaterman | 2 | {bio} |
mencal | 2 | {tools} |
nutsqlite | 2 | {tools} |
qcumber | 2 | {bio} |
- samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
segemehl | 2 | {bio} |
skesa | 2 | {bio} |
spaced | 2 | {bio} |
srf | 2 | {bio-dev} |
thesias | 2 | {bio,covid-19} |
- tree-puzzle | 2 | {bio,bio-phylogeny,cloud} |
+ tree-puzzle | 2 | {bio-phylogeny,bio,cloud} |
atropos | 1 | {bio} |
- biosig4c++ | 1 | {physics,imaging-dev} |
+ biosig4c++ | 1 | {imaging-dev,physics} |
ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libsmithwaterman | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
- maxflow | 1 | {imaging-dev} |
nanook | 1 | {bio} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
@@ -238,14 +235,15 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
papyrus | 1 | {imaging-dev} |
pilercr | 1 | {bio} |
qrisk2 | 1 | {practice} |
- stringtie | 1 | {bio,covid-19} |
+ samtools-legacy | 1 | {bio-dev} |
+ stringtie | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
volpack | 1 | {imaging-dev} |
- acedb | 0 | {cloud,bio} |
- augur | 0 | {covid-19,bio} |
+ acedb | 0 | {bio,cloud} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
- biobambam2 | 0 | {bio,bio-dev,covid-19} |
+ biobambam2 | 0 | {bio-dev,covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
@@ -257,7 +255,7 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -284,12 +282,14 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
+ libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
+ maxflow | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
@@ -298,11 +298,11 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
python-etelemetry | 0 | {covid-19} |
- python-py2bit | 0 | {bio,bio-dev} |
+ python-py2bit | 0 | {bio-dev,bio} |
python-questplus | 0 | {covid-19} |
python-scitrack | 0 | {covid-19} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seqan | 0 | {bio-dev} |
@@ -310,12 +310,13 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
sift | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
- spaln | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
+ bustools | -1 | {bio} |
relion | -1 | {bio} |
-(345 rows)
+(346 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,71 +1,69 @@
-Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
+Last-Update: Sat, 04 Apr 2020 13:42:04 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+----------------------------------------------------+----------------------+------------------------
- atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
- biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
- biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
- biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00
- charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
- cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
- daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
- dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
- discosnp | 2.4.3 | 4.4.4 | Andreas Tille,Olivier Sallou | Andreas Tille | 2020-01-27 15:19:13+00
- ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
- falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200330.e99c5d7 | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
- gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
- hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00
- igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200330.cb91494 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.713 | 2.0.714 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
- nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
- pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
- plink2 | 2.00~a3-200217 | 200328 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- proteinortho | 6.0.14 | 6.0.15 | Andreas Tille | Michael R. Crusoe | 2020-02-17 14:53:34+00
- pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
- python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-cgecore | 1.5.3 | 1.5.4 | Andreas Tille | Steffen Moeller | 2020-03-17 12:49:52+00
- python-cobra | 0.14.2 | 0.18.0 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
- python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
- python-skbio | 0.5.5 | 0.5.6 | Andreas Tille,Kevin Murray,Tim Booth | Michael R. Crusoe | 2020-02-28 14:48:20+00
- q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
- q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
- q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
- qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00
- seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
- sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
- stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
- sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- umis | 1.0.6 | 1.0.7 | Andreas Tille | Andreas Tille | 2020-01-27 07:34:12+00
- unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
- vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(63 rows)
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
+ atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
+ biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
+ biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
+ biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
+ biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00
+ ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00
+ cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
+ dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
+ discosnp | 2.4.3 | 4.4.4 | Andreas Tille,Olivier Sallou | Andreas Tille | 2020-01-27 15:19:13+00
+ ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
+ falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
+ fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200330.e99c5d7 | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
+ hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00
+ igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200330.cb91494 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
+ mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
+ pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
+ picard-tools | 2.18.25 | 2.22.2 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
+ plink2 | 2.00~a3-200217 | 200328 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ praat | 6.1.09 | 6.1.10 | Andreas Tille,Rafael Laboissière | Rafael Laboissière | 2020-01-31 12:19:41+00
+ proteinortho | 6.0.14 | 6.0.15 | Andreas Tille | Michael R. Crusoe | 2020-02-17 14:53:34+00
+ pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00
+ python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-cgecore | 1.5.3 | 1.5.4 | Andreas Tille | Steffen Moeller | 2020-03-17 12:49:52+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
+ python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
+ python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
+ python-skbio | 0.5.5 | 0.5.6 | Andreas Tille,Kevin Murray,Tim Booth | Michael R. Crusoe | 2020-02-28 14:48:20+00
+ q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
+ q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
+ q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
+ qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
+ seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ sra-sdk | 2.9.3 | 2.10.5 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
+ sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+(61 rows)
source | id | severity | title
@@ -204,6 +202,7 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
pixelmed | 728569 | normal | Add PixelMed SCP
praat | 919490 | normal | praat FTCBFS: many reasons
praat | 955576 | serious | src:praat: fails to migrate to testing for too long: ftbfs mips64el
+ praat | 955659 | serious | praat: FTBFS: failed tests
profnet | 905206 | serious | profnet: autopkgtest regression
profphd | 897605 | normal | profphd failure in stretch
profphd | 942064 | grave | profphd: autopkgtest failure
@@ -216,6 +215,7 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package
python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures
python-biom-format | 950929 | normal | python-biom-format: FTBFS with pandas 1.0: test failures
+ python-cobra | 955656 | serious | python-cobra: FTBFS: E ModuleNotFoundError: No module named 'matplotlib'
python-cogent | 950474 | important | python-cogent FTBFS on armel and i386: test failures
python-intervaltree-bio | 920545 | serious | python-intervaltree breaks python-intervaltree-bio autopkgtest
python-mne | 733270 | wishlist | please provide python-mne-doc package
@@ -242,6 +242,7 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
sambamba | 948919 | serious | sambamba FTBFS: undefined reference to 'cram_to_bam'
seqan2 | 892222 | normal | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem
+ seqsero | 955648 | serious | seqsero: FTBFS: build-dependency not installable: sra-toolkit
sight | 954711 | wishlist | FTBFS with Boost 1.71
simka | 954273 | important | simka: arm64 autopkgtest time out
simpleitk | 949355 | serious | simpleitk FTBFS: test failures
@@ -268,5 +269,5 @@ Last-Update: Sat, 04 Apr 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(198 rows)
+(201 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bd834f6d39dcf1f073d3beca04a347129256ada9
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bd834f6d39dcf1f073d3beca04a347129256ada9
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