[med-svn] [Git][med-team/fastqc][master] Provide run-unit-test as user example

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / fastqc


Commits:
a1646d21 by Andreas Tille at 2020-04-07T08:38:37+02:00
Provide run-unit-test as user example

- - - - -


5 changed files:

- + debian/README.test
- debian/changelog
- debian/docs
- debian/fastqc.examples
- debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    cd examples && bash run-unit-test
+
+in order to confirm its integrity.


=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+fastqc (0.11.9+dfsg-4) UNRELEASED; urgency=medium
+
+  * Provide run-unit-test as user example
+
+ -- Andreas Tille <tille at debian.org>  Tue, 07 Apr 2020 08:30:38 +0200
+
 fastqc (0.11.9+dfsg-3) unstable; urgency=medium
 
   [ tony mancill ]


=====================================
debian/docs
=====================================
@@ -1 +1,2 @@
 README.txt
+debian/README.test


=====================================
debian/fastqc.examples
=====================================
@@ -1 +1,3 @@
 debian/tests.fastqc/*
+debian/tests/run-unit-test
+debian/tests/*.txt


=====================================
debian/tests/run-unit-test
=====================================
@@ -2,7 +2,6 @@
 set -e
 
 pkg="fastqc"
-tests_dir="$PWD/debian/tests"
 test_failures=0
 
 if [ "$AUTOPKGTEST_TMP" = "" ] ; then
@@ -19,7 +18,7 @@ find . -name "*.gz" -exec gunzip \{\} \;
 for sample in example.fastq toy_sam.sam toy_bam.bam ; do
     /usr/bin/fastqc --extract "$sample"
     result="${sample%%.*}_fastqc"
-    expected="${tests_dir}/${result}_expected_summary.txt"
+    expected="${result}_expected_summary.txt"
     if ! diff -q "${result}/summary.txt" ${expected} 2>/dev/null ; then
 	(( test_failures += 1 ))
         cat <<EOT



View it on GitLab: https://salsa.debian.org/med-team/fastqc/-/commit/a1646d2190c3ae73692c715a0b9f59fd32a6e8f4

-- 
View it on GitLab: https://salsa.debian.org/med-team/fastqc/-/commit/a1646d2190c3ae73692c715a0b9f59fd32a6e8f4
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