[med-svn] [Git][med-team/snakemake][debian_for_upstream_5.14.0_which_requires_conda] 4 commits: Reproducibility: don't ship (timestamped) test logs.
Rebecca N. Palmer
gitlab at salsa.debian.org
Thu Apr 9 22:16:59 BST 2020
Rebecca N. Palmer pushed to branch debian_for_upstream_5.14.0_which_requires_conda at Debian Med / snakemake
Commits:
e5b407fe by Rebecca N. Palmer at 2020-04-09T18:12:13+01:00
Reproducibility: don't ship (timestamped) test logs.
- - - - -
a767af98 by Rebecca N. Palmer at 2020-04-09T18:14:04+01:00
Add self to Uploaders.
- - - - -
f156c10e by Rebecca N. Palmer at 2020-04-09T22:13:55+01:00
Update d/copyright.
- - - - -
e5cc7980 by Rebecca N. Palmer at 2020-04-09T22:15:05+01:00
Remove Files-Excluded: the excluded directory no longer exists upstream.
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/copyright
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -13,6 +13,9 @@ snakemake (5.14.0-1) UNRELEASED; urgency=medium
* Disable buggy test (upstream 322) and tests needing conda or docker.
* Delete unused patches.
* Use boto3 (like upstream) not boto.
+ * Reproducibility: don't ship (timestamped) test logs.
+ * Add self to Uploaders.
+ * Update d/copyright, remove no longer needed Files-Excluded.
-- Rebecca N. Palmer <rebecca_palmer at zoho.com> Thu, 09 Apr 2020 14:57:00 +0100
=====================================
debian/control
=====================================
@@ -1,6 +1,6 @@
Source: snakemake
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Kevin Murray <kdmfoss at gmail.com>
+Uploaders: Kevin Murray <kdmfoss at gmail.com>, Rebecca N. Palmer <rebecca_palmer at zoho.com>
Section: science
Priority: optional
Build-Depends: ca-certificates,
=====================================
debian/copyright
=====================================
@@ -2,14 +2,24 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: snakemake
Upstream-Contact: Johannes Köster <johannes.koester at tu-dortmund.de>
Source: https://github.com/snakemake/snakemake
-Files-Excluded: docker
Files: *
-Copyright: 2015 Johannes Köster <johannes.koester at tu-dortmund.de>
+Copyright: 2015-2020 Johannes Köster <johannes.koester at tu-dortmund.de>, Manuel Holtgrewe, Christopher Tomkins-Tinch, Sven Nahnsen, Sebastian Kurscheid and contributors
License: Expat
+Files: tests/test_script/expected-results/test.html
+Copyright: 2005, 2015 jQuery Foundation, Inc. (jquery)
+ 2011-2015 Twitter, Inc. (bootstrap)
+ 2014 Alexander Farkas (@afarkas), @jdalton, @jon_neal, @rem (html5shiv)
+ 2013 Scott Jehl (Respond.js)
+ 2008-2016 jQuery Foundation and other contributors (jquery-ui)
+ 2013 Greg Franko (jquery Tocify)
+ 2014 Aidan Lister and Ruben Arslan (jQuery Plugin: Sticky Tabs)
+License: Expat
+Comment: This is a test reference, we don't actually run this code. For source code of these modules, see r-cran-rmarkdown (0.8 for this version) and dependencies.
+
Files: debian/*
-Copyright: 2015 Kevin Murray <spam at kdmurray.id.au>
+Copyright: 2015-2020 Kevin Murray <spam at kdmurray.id.au> and Debian Med Team
License: Expat
License: Expat
=====================================
debian/rules
=====================================
@@ -23,7 +23,7 @@ export PYBUILD_TEST_ARGS=python{version} -m pytest tests/test*.py -n auto -k 'no
# test_container uses docker://bash
# test_cluster_sync is broken (https://github.com/snakemake/snakemake/issues/322)
-export PYBUILD_AFTER_TEST_python3=rm -fr {build_dir}/bin {build_dir}/tests {dir}/tests/test_filegraph/.snakemake/
+export PYBUILD_AFTER_TEST_python3=rm -fr {build_dir}/bin {build_dir}/tests {dir}/tests/test_filegraph/.snakemake/ {dir}/tests/linting/*/.snakemake/
export PATH:=$(shell pybuild --print build_dir --interpreter python3 --name $(PYBUILD_NAME))/bin:$(PATH)
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/1cf3a516468339a8a3489b681efa689a876cab46...e5cc7980fc0ee227c5e7fcb907ec558de2474671
--
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/1cf3a516468339a8a3489b681efa689a876cab46...e5cc7980fc0ee227c5e7fcb907ec558de2474671
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200409/c072eb03/attachment-0001.html>
More information about the debian-med-commit
mailing list