[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Sun Apr 12 14:44:22 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
af718fad by Andreas Tille at 2020-04-12T13:44:17+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,30 +1,30 @@
-Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
+Last-Update: Sun, 12 Apr 2020 13:42:04 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    176 | {covid-19,imaging}                                  | 
- orthanc                       |     97 | {imaging,covid-19,practice}                         | 
- gdcm                          |     44 | {imaging-dev}                                       | 
- orthanc-wsi                   |     41 | {laboratory,imaging,his,practice,covid-19,oncology} | 
- amide                         |     30 | {imaging}                                           | 
+ dcmtk                         |    175 | {covid-19,imaging}                                  | 
+ orthanc                       |     95 | {imaging,covid-19,practice}                         | 
+ gdcm                          |     45 | {imaging-dev}                                       | 
+ orthanc-wsi                   |     39 | {laboratory,imaging,his,practice,covid-19,oncology} | 
  htsjdk                        |     30 | {bio-dev}                                           | 
- dcm2niix                      |     26 | {imaging}                                           | 
+ amide                         |     29 | {imaging}                                           | 
+ dcm2niix                      |     25 | {imaging}                                           | 
  dicom3tools                   |     24 | {imaging}                                           | 
  dicomscope                    |     24 | {imaging}                                           | 
  gdcm                          |     21 | {imaging,covid-19}                                  | 
  gnumed-server                 |     21 | {covid-19,practice}                                 | 
  ngs-sdk                       |     19 | {bio-dev}                                           | 
+ hunspell-en-med               |     14 | {tools}                                             | 
  minc-tools                    |     14 | {imaging}                                           | 
  adun.app                      |     13 | {bio}                                               | 
- hunspell-en-med               |     13 | {tools}                                             | 
- ncbi-entrez-direct            |     13 | {bio}                                               | 
  invesalius                    |     12 | {imaging}                                           | 
  king                          |     12 | {imaging,typesetting}                               | 
+ ncbi-entrez-direct            |     12 | {bio}                                               | 
  vtk-dicom                     |     12 | {imaging}                                           | 
+ insighttoolkit4               |     11 | {imaging-dev}                                       | 
  pixelmed                      |     11 | {imaging}                                           | 
  ea-utils                      |     10 | {bio}                                               | 
  gasic                         |     10 | {cloud,bio}                                         | 
- insighttoolkit4               |     10 | {imaging-dev}                                       | 
  mia                           |     10 | {imaging}                                           | 
  ngs-sdk                       |     10 | {bio-dev}                                           | 
  openslide                     |     10 | {imaging}                                           | 
@@ -34,13 +34,13 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  gdcm                          |      9 | {imaging-dev}                                       | 
  jebl2                         |      9 | {bio-dev}                                           | 
  king-probe                    |      9 | {bio}                                               | 
+ plastimatch                   |      9 | {imaging}                                           | 
  psychopy                      |      9 | {psychology}                                        | 
  biojava-live                  |      8 | {bio-dev}                                           | 
  librg-utils-perl              |      8 | {bio}                                               | 
  mipe                          |      8 | {cloud,bio}                                         | 
  paml                          |      8 | {bio}                                               | 
  parsnp                        |      8 | {bio}                                               | 
- plastimatch                   |      8 | {imaging}                                           | 
  tree-puzzle                   |      8 | {cloud,bio,bio-phylogeny}                           | 
  dazzdb                        |      7 | {bio}                                               | 
  diamond-aligner               |      7 | {bio,covid-19}                                      | 
@@ -90,6 +90,7 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  libncl                        |      5 | {bio}                                               | 
  maqview                       |      5 | {bio}                                               | 
  melting                       |      5 | {bio,cloud}                                         | 
+ mencal                        |      5 | {tools}                                             | 
  mrs                           |      5 | {bio}                                               | 
  phyutility                    |      5 | {bio,cloud}                                         | 
  placnet                       |      5 | {bio}                                               | 
@@ -124,8 +125,9 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  ipig                          |      4 | {bio}                                               | 
  lamarc                        |      4 | {bio}                                               | 
  libdivsufsort                 |      4 | {bio-dev}                                           | 
+ libminc                       |      4 | {imaging-dev}                                       | 
+ libsbml                       |      4 | {bio-dev}                                           | 
  mapsembler2                   |      4 | {cloud,bio}                                         | 
- mencal                        |      4 | {tools}                                             | 
  microbegps                    |      4 | {bio}                                               | 
  mlv-smile                     |      4 | {bio,cloud}                                         | 
  murasaki                      |      4 | {bio}                                               | 
@@ -147,14 +149,11 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  assemblytics                  |      3 | {bio}                                               | 
  beast2-mcmc                   |      3 | {bio}                                               | 
  canu                          |      3 | {bio}                                               | 
- cufflinks                     |      3 | {bio,cloud}                                         | 
  dicompyler                    |      3 | {oncology}                                          | 
  jmodeltest                    |      3 | {bio,bio-phylogeny}                                 | 
  libgff                        |      3 | {bio-dev}                                           | 
- libminc                       |      3 | {imaging-dev}                                       | 
  libpal-java                   |      3 | {bio-dev}                                           | 
  librdp-taxonomy-tree-java     |      3 | {bio-dev}                                           | 
- libsbml                       |      3 | {bio-dev}                                           | 
  logol                         |      3 | {bio}                                               | 
  lucy                          |      3 | {bio}                                               | 
  maffilter                     |      3 | {bio}                                               | 
@@ -179,6 +178,7 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  transrate-tools               |      3 | {bio}                                               | 
  biosig4c++                    |      2 | {imaging-dev,physics}                               | 
  blasr                         |      2 | {bio-ngs,bio}                                       | 
+ cufflinks                     |      2 | {bio,cloud}                                         | 
  elastix                       |      2 | {imaging}                                           | 
  getdata                       |      2 | {bio}                                               | 
  igor                          |      2 | {bio}                                               | 
@@ -196,6 +196,7 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  roguenarok                    |      2 | {bio}                                               | 
  rtax                          |      2 | {cloud,bio}                                         | 
  runcircos-gui                 |      2 | {bio}                                               | 
+ samtools-legacy               |      2 | {bio-dev}                                           | 
  scrm                          |      2 | {bio}                                               | 
  seqmagick                     |      2 | {covid-19,bio}                                      | 
  sga                           |      2 | {bio}                                               | 
@@ -222,6 +223,8 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  libchado-perl                 |      1 | {bio-dev}                                           | 
  libctapimkt                   |      1 | {practice}                                          | 
  libsmithwaterman              |      1 | {bio-dev}                                           | 
+ libvistaio                    |      1 | {imaging-dev}                                       | 
+ maxflow                       |      1 | {imaging-dev}                                       | 
  nanook                        |      1 | {bio}                                               | 
  opensurgsim                   |      1 | {imaging-dev}                                       | 
  orthanc-postgresql            |      1 | {imaging}                                           | 
@@ -229,7 +232,7 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  pilercr                       |      1 | {bio}                                               | 
  python-scitrack               |      1 | {covid-19}                                          | 
  relion                        |      1 | {bio}                                               | 
- samtools-legacy               |      1 | {bio-dev}                                           | 
+ seqan                         |      1 | {bio-dev}                                           | 
  sift                          |      1 | {bio}                                               | 
  skesa                         |      1 | {bio}                                               | 
  stringtie                     |      1 | {bio,covid-19}                                      | 
@@ -279,9 +282,7 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  libqes                        |      0 | {bio-dev}                                           | 
  libseqlib                     |      0 | {bio-dev}                                           | 
  libstatgen                    |      0 | {bio-dev}                                           | 
- libvistaio                    |      0 | {imaging-dev}                                       | 
  libxdf                        |      0 | {imaging-dev}                                       | 
- maxflow                       |      0 | {imaging-dev}                                       | 
  metastudent-data              |      0 | {bio}                                               | 
  metastudent-data-2            |      0 | {bio}                                               | 
  mia                           |      0 | {imaging-dev}                                       | 
@@ -301,7 +302,6 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  relion                        |      0 | {bio}                                               | 
  sambamba                      |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
- seqan                         |      0 | {bio-dev}                                           | 
  seq-gen                       |      0 | {bio}                                               | 
  simpleitk                     |      0 | {imaging-dev}                                       | 
  skewer                        |      0 | {bio}                                               | 
@@ -314,6 +314,5 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  vtk-dicom                     |      0 | {imaging-dev}                                       | 
  wtdbg2                        |      0 | {covid-19}                                          | 
  bustools                      |     -1 | {bio}                                               | 
- relion                        |     -1 | {bio}                                               | 
-(343 rows)
+(342 rows)
 


=====================================
outdated_med-packages.txt
=====================================
@@ -1,73 +1,73 @@
-Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
+Last-Update: Sun, 12 Apr 2020 13:42:04 +0000
 
- source                        |             version             |        upstream_version         |                     uploaders                                           | Last uploader        |     Last uploaded      
--------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------
- artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                           | Andreas Tille        | 2019-02-08 11:19:24+00
- baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                          | Andreas Tille        | 2018-09-24 13:04:18+00
- bbmap                         | 38.79                           | 38.81                           | Andreas Tille                                                           | Andreas Tille        | 2020-02-27 11:08:04+00
- biobambam2                    | 2.0.160                         | 2.0.162+ds                      | Andreas Tille                                                           | Andreas Tille        | 2020-03-27 10:34:45+00
- biojava-live                  | 1.7.1                           | 1.9.3                           | Andreas Tille,Olivier Sallou,Steffen Moeller                            | Andreas Tille        | 2018-11-12 15:49:23+00
- biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                          | Olivier Sallou       | 2020-02-08 18:22:42+00
- biomaj3-core                  | 3.0.19                          | 3.0.23                          | Olivier Sallou                                                          | Olivier Sallou       | 2019-11-12 11:20:23+00
- biomaj3-download              | 3.1.0                           | 3.1.2                           | Olivier Sallou                                                          | Olivier Sallou       | 2019-11-12 13:19:24+00
- biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                          | Olivier Sallou       | 2019-11-12 11:20:38+00
- biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-03-02 08:38:37+00
- charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                           | Andreas Tille        | 2019-01-10 20:10:56+00
- daligner                      | 1.0+git20200115.c2b47da         | 1.0+git20200322.477d5b9         | Andreas Tille                                                           | Andreas Tille        | 2020-01-28 10:34:12+00
- dazzdb                        | 1.0+git20200115.d8adde7         | 1.0+git20200322.ba88d76         | Andreas Tille                                                           | Andreas Tille        | 2020-01-23 16:34:35+00
- fastp                         | 0.20.0                          | 0.20.1                          | Dylan Aïssi                                                            | Dylan Aïssi         | 2019-07-22 13:49:23+00
- fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                 | Amul Shah            | 2019-02-28 14:12:19+00
- gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200330.e99c5d7       | Andreas Tille,Nadiya Sitdykova                                          | Michael R. Crusoe    | 2020-02-17 14:52:30+00
- hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                      | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
- htseq                         | 0.11.3                          | 0.11.4                          | Andreas Tille,Diane Trout                                               | Diane Trout          | 2020-03-04 07:04:25+00
- htsjdk                        | 2.18.2                          | 2.21.3                          | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean             | Andreas Tille        | 2019-03-01 22:19:40+00
- hyphy                         | 2.5.1                           | 2.5.8                           | Andreas Tille                                                           | Andreas Tille        | 2020-01-07 21:19:50+00
- igv                           | 2.4.17                          | 2.8.2                           | Andreas Tille,Olivier Sallou                                            | Andreas Tille        | 2019-01-30 15:11:57+00
- imagej                        | 1.52r                           | 1.52u                           | David Miguel Susano Pinto                                               | Andreas Tille        | 2019-12-04 14:55:11+00
- jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                           | Andreas Tille        | 2018-07-05 12:05:57+00
- kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20200325.3558942       | Andreas Tille                                                           | Andreas Tille        | 2019-02-14 13:26:09+00
- king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                            | Andreas Tille        | 2018-07-16 07:34:48+00
- kissplice                     | 2.4.0-p1                        | 2.5.0                           | Andreas Tille,David Parsons                                             | Saira Hussain        | 2019-08-14 21:04:51+00
- kma                           | 1.2.21                          | 1.2.22                          | Andreas Tille                                                           | Steffen Moeller      | 2020-01-17 22:54:10+00
- libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                           | Andreas Tille        | 2019-07-15 13:35:45+00
- libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                           | Andreas Tille        | 2019-08-19 00:34:56+00
- libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                         | Michael R. Crusoe    | 2020-02-14 13:04:26+00
- libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200405.630f312         | Andreas Tille                                                           | Andreas Tille        | 2018-05-25 21:49:43+00
- libmaus2                      | 2.0.713                         | 2.0.715                         | Andreas Tille,Steffen Moeller                                           | Andreas Tille        | 2020-03-27 09:34:39+00
- libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                  | Andreas Tille        | 2018-09-26 08:35:30+00
- libthread-pool                | 2.0.1                           | 2.0.2                           | Andreas Tille                                                           | Andreas Tille        | 2019-11-19 21:21:23+00
- metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                           | Andreas Tille        | 2019-11-08 07:19:11+00
- minia                         | 3.2.1+git20191130.5b131b9       | 3.2.1+git20200409.489e374       | Andreas Tille,Olivier Sallou                                            | Andreas Tille        | 2019-12-16 09:04:06+00
- ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                              | Aaron M. Ucko        | 2020-02-17 01:50:53+00
- ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200326                   | Aaron M. Ucko                                                           | Aaron M. Ucko        | 2020-02-03 03:53:53+00
- plink2                        | 2.00~a3-200217                  | 200409                          | Dylan Aïssi                                                            | Dylan Aïssi         | 2020-02-19 06:19:18+00
- pybel                         | 0.14.5                          | 0.14.6                          | Steffen Moeller                                                         | Andreas Tille        | 2020-03-29 18:48:55+00
- pynn                          | 0.7.5                           | 0.9.5                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-04-03 16:34:56+00
- python-avro                   | 1.9.1                           | 1.9.2                           | Afif Elghraoui                                                          | Andreas Tille        | 2019-12-18 08:41:55+00
- python-bids-validator         | 1.2.4                           | 1.5.1                           | Yaroslav Halchenko                                                      | Yaroslav Halchenko   | 2019-08-17 19:00:11+00
- python-cgecore                | 1.5.3                           | 1.5.4                           | Andreas Tille                                                           | Steffen Moeller      | 2020-03-17 12:49:52+00
- python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                           | Andreas Tille        | 2019-12-06 16:51:43+00
- python-pbcore                 | 1.7.1+git20200313.41ba394       | 1.7.1+git20200408.0579ac1       | Andreas Tille                                                           | Steffen Moeller      | 2020-03-21 19:39:08+00
- python-pymummer               | 0.10.3                          | 0.11.0                          | Afif Elghraoui                                                          | Andreas Tille        | 2019-01-07 09:06:07+00
- python-xopen                  | 0.8.4                           | 0.9.0                           | Andreas Tille                                                           | Steffen Moeller      | 2019-11-05 15:34:45+00
- q2cli                         | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2019-12-16 10:20:08+00
- q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2020-01-26 07:34:32+00
- q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2020-01-26 07:34:40+00
- q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2019-11-14 22:00:17+00
- qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                         | Liubov Chuprikova    | 2019-12-16 09:51:27+00
- resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200408.0322c0d         | Andreas Tille                                                           | Andreas Tille        | 2019-11-16 23:00:12+00
- seaview                       | 4.7                             | 5.0.2                           | Andreas Tille,Charles Plessy                                            | Andreas Tille        | 2018-05-09 13:43:40+00
- simka                         | 1.5.1                           | 1.5.2                           | Shayan Doust                                                            | Andreas Tille        | 2020-01-12 18:49:47+00
- simpleitk                     | 1.0.1                           | 1.2.0                           | Ghislain Antony Vaillant                                                | Andreas Tille        | 2019-01-30 10:06:08+00
- skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                                           | Andreas Tille        | 2019-08-20 14:49:33+00
- snakemake                     | 5.10.0                          | 5.14.0                          | Kevin Murray                                                            | Andreas Tille        | 2020-04-09 09:34:37+00
- spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille        | 2019-11-22 10:05:04+00
- sra-sdk                       | 2.9.3                           | 2.10.5                          | Andreas Tille,Charles Plessy                                            | Steffen Moeller      | 2018-10-23 20:40:02+00
- stacks                        | 2.52                            | 2.53                            | Andreas Tille,Tim Booth                                                 | Steffen Moeller      | 2020-03-26 02:50:13+00
- t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                           | Andreas Tille        | 2019-02-15 07:57:10+00
- unanimity                     | 3.3.0                           | 4.2.0-1                         | Afif Elghraoui,Andreas Tille                                            | Adrian Bunk          | 2019-02-06 07:34:42+00
- vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                 | Andreas Tille        | 2019-12-17 10:07:09+00
- xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                  | Andreas Tille        | 2019-01-25 18:23:59+00
+ source                        |             version             |        upstream_version         |                      uploaders                                            | Last uploader        |     Last uploaded      
+-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
+ baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                            | Andreas Tille        | 2018-09-24 13:04:18+00
+ bbmap                         | 38.79                           | 38.81                           | Andreas Tille                                                             | Andreas Tille        | 2020-02-27 11:08:04+00
+ biobambam2                    | 2.0.160                         | 2.0.162+ds                      | Andreas Tille                                                             | Andreas Tille        | 2020-03-27 10:34:45+00
+ biomaj3-core                  | 3.0.19                          | 3.0.23                          | Olivier Sallou                                                            | Olivier Sallou       | 2019-11-12 11:20:23+00
+ biomaj3-download              | 3.1.0                           | 3.1.2                           | Olivier Sallou                                                            | Olivier Sallou       | 2019-11-12 13:19:24+00
+ biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                            | Olivier Sallou       | 2019-11-12 11:20:38+00
+ biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille        | 2020-03-02 08:38:37+00
+ daligner                      | 1.0+git20200115.c2b47da         | 1.0+git20200322.477d5b9         | Andreas Tille                                                             | Andreas Tille        | 2020-01-28 10:34:12+00
+ dazzdb                        | 1.0+git20200115.d8adde7         | 1.0+git20200322.ba88d76         | Andreas Tille                                                             | Andreas Tille        | 2020-01-23 16:34:35+00
+ discosnp                      | 2.4.3                           | 4.4.4                           | Andreas Tille,Olivier Sallou                                              | Andreas Tille        | 2020-01-27 15:19:13+00
+ elastix                       | 4.9.0                           | 5.0.0                           | Gert Wollny,Steve M. Robbins                                              | Andreas Tille        | 2019-01-15 11:50:11+00
+ fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                   | Amul Shah            | 2019-02-28 14:12:19+00
+ gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200330.e99c5d7       | Andreas Tille,Nadiya Sitdykova                                            | Michael R. Crusoe    | 2020-02-17 14:52:30+00
+ hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                        | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
+ htseq                         | 0.11.3                          | 0.11.4                          | Andreas Tille,Diane Trout                                                 | Diane Trout          | 2020-03-04 07:04:25+00
+ hyphy                         | 2.5.1                           | 2.5.8                           | Andreas Tille                                                             | Andreas Tille        | 2020-01-07 21:19:50+00
+ igor                          | 1.3.0                           | 1.4.0                           | Steffen Moeller                                                           | Andreas Tille        | 2019-01-26 17:51:04+00
+ igv                           | 2.4.17                          | 2.8.2                           | Andreas Tille,Olivier Sallou                                              | Andreas Tille        | 2019-01-30 15:11:57+00
+ imagej                        | 1.52r                           | 1.52u                           | David Miguel Susano Pinto                                                 | Andreas Tille        | 2019-12-04 14:55:11+00
+ jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                             | Andreas Tille        | 2018-07-05 12:05:57+00
+ kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20200325.3558942       | Andreas Tille                                                             | Andreas Tille        | 2019-02-14 13:26:09+00
+ king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                              | Andreas Tille        | 2018-07-16 07:34:48+00
+ kissplice                     | 2.4.0-p1                        | 2.5.0                           | Andreas Tille,David Parsons                                               | Saira Hussain        | 2019-08-14 21:04:51+00
+ kma                           | 1.2.21                          | 1.2.22                          | Andreas Tille                                                             | Steffen Moeller      | 2020-01-17 22:54:10+00
+ libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                             | Andreas Tille        | 2019-08-19 00:34:56+00
+ libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                           | Michael R. Crusoe    | 2020-02-14 13:04:26+00
+ libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200409.de58067         | Andreas Tille                                                             | Andreas Tille        | 2018-05-25 21:49:43+00
+ libmaus2                      | 2.0.713                         | 2.0.715                         | Andreas Tille,Steffen Moeller                                             | Andreas Tille        | 2020-03-27 09:34:39+00
+ libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                    | Andreas Tille        | 2018-09-26 08:35:30+00
+ libthread-pool                | 2.0.1                           | 2.0.2                           | Andreas Tille                                                             | Andreas Tille        | 2019-11-19 21:21:23+00
+ metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                             | Andreas Tille        | 2019-11-08 07:19:11+00
+ minia                         | 3.2.1+git20191130.5b131b9       | 3.2.1+git20200409.489e374       | Andreas Tille,Olivier Sallou                                              | Andreas Tille        | 2019-12-16 09:04:06+00
+ mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                              | Andreas Tille        | 2018-06-11 07:19:31+00
+ ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                | Aaron M. Ucko        | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200326                   | Aaron M. Ucko                                                             | Aaron M. Ucko        | 2020-02-03 03:53:53+00
+ nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille        | 2020-03-03 14:58:34+00
+ plink2                        | 2.00~a3-200217                  | 200409                          | Dylan Aïssi                                                              | Dylan Aïssi         | 2020-02-19 06:19:18+00
+ pybel                         | 0.14.5                          | 0.14.6                          | Steffen Moeller                                                           | Andreas Tille        | 2020-03-29 18:48:55+00
+ pynn                          | 0.7.5                           | 0.9.5                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille        | 2020-04-03 16:34:56+00
+ python-avro                   | 1.9.1                           | 1.9.2                           | Afif Elghraoui                                                            | Andreas Tille        | 2019-12-18 08:41:55+00
+ python-bids-validator         | 1.2.4                           | 1.5.1                           | Yaroslav Halchenko                                                        | Yaroslav Halchenko   | 2019-08-17 19:00:11+00
+ python-cgecore                | 1.5.3                           | 1.5.4                           | Andreas Tille                                                             | Steffen Moeller      | 2020-03-17 12:49:52+00
+ python-cobra                  | 0.14.2                          | 0.18.0                          | Afif Elghraoui                                                            | Liubov Chuprikova    | 2019-03-02 06:49:44+00
+ python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                             | Andreas Tille        | 2019-12-06 16:51:43+00
+ python-pbcore                 | 1.7.1+git20200313.41ba394       | 1.7.1+git20200408.0579ac1       | Andreas Tille                                                             | Steffen Moeller      | 2020-03-21 19:39:08+00
+ python-xopen                  | 0.8.4                           | 0.9.0                           | Andreas Tille                                                             | Steffen Moeller      | 2019-11-05 15:34:45+00
+ q2cli                         | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova    | 2019-12-16 10:20:08+00
+ q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova    | 2020-01-26 07:34:32+00
+ q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova    | 2020-01-26 07:34:40+00
+ q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova    | 2019-11-14 22:00:17+00
+ qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                           | Liubov Chuprikova    | 2019-12-16 09:51:27+00
+ racon                         | 1.4.10                          | 1.4.13                          | Andreas Tille,Cédric Lood                                                | Michael R. Crusoe    | 2019-11-12 17:22:24+00
+ relion                        | 1.4                             | 3.0.8                           | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille        | 2018-06-14 12:49:40+00
+ resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200408.0322c0d         | Andreas Tille                                                             | Andreas Tille        | 2019-11-16 23:00:12+00
+ salmon                        | 0.12.0                          | 1.2.0                           | Kevin Murray,Michael R. Crusoe                                            | Andreas Tille        | 2018-12-13 19:05:56+00
+ seaview                       | 4.7                             | 5.0.2                           | Andreas Tille,Charles Plessy                                              | Andreas Tille        | 2018-05-09 13:43:40+00
+ simka                         | 1.5.1                           | 1.5.2                           | Shayan Doust                                                              | Andreas Tille        | 2020-01-12 18:49:47+00
+ simpleitk                     | 1.0.1                           | 1.2.0                           | Ghislain Antony Vaillant                                                  | Andreas Tille        | 2019-01-30 10:06:08+00
+ snakemake                     | 5.10.0                          | 5.14.0                          | Kevin Murray                                                              | Andreas Tille        | 2020-04-09 09:34:37+00
+ spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss   | Andreas Tille        | 2019-11-22 10:05:04+00
+ stacks                        | 2.52                            | 2.53                            | Andreas Tille,Tim Booth                                                   | Steffen Moeller      | 2020-03-26 02:50:13+00
+ t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                             | Andreas Tille        | 2019-02-15 07:57:10+00
+ tnseq-transit                 | 3.0.2                           | 3.1.0                           | Andreas Tille                                                             | Steffen Moeller      | 2020-01-18 22:25:05+00
+ unanimity                     | 3.3.0                           | 4.2.0-1                         | Afif Elghraoui,Andreas Tille                                              | Adrian Bunk          | 2019-02-06 07:34:42+00
+ vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                   | Andreas Tille        | 2019-12-17 10:07:09+00
+ xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                    | Andreas Tille        | 2019-01-25 18:23:59+00
 (66 rows)
 
 
@@ -118,7 +118,6 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  dicom3tools                   | 731158 | normal    | Error - Information Object Not found (=UltrasoundMultiframeImageStorage)
  dicom3tools                   | 815628 | normal    | dicom3tools: dcintro man page missing
  dicomscope                    | 927089 | normal    | dicomscope-doc: error merging doc-base files: format pdf already defined
- discosnp                      | 942404 | serious   | discosnp: flaky autopkgtest: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: No such file or directory
  drmaa                         | 953832 | serious   | cannot allocate memory in static TLS block
  ea-utils                      | 846858 | normal    | src:ea-utils: New version available
  ea-utils                      | 862118 | wishlist  | ea-utils: New upstream version available
@@ -265,5 +264,5 @@ Last-Update: Sun, 12 Apr 2020 01:42:03 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(192 rows)
+(191 rows)
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/af718fad3c2cf160522daa1f376e74fe3ac3698a

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/af718fad3c2cf160522daa1f376e74fe3ac3698a
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