[med-svn] [Git][med-team/soapaligner][master] 12 commits: Homepage has vanished - point to web archive to reflect this
Andreas Tille
gitlab at salsa.debian.org
Fri Apr 17 10:47:44 BST 2020
Andreas Tille pushed to branch master at Debian Med / soapaligner
Commits:
2764a6c5 by Andreas Tille at 2020-04-17T11:38:49+02:00
Homepage has vanished - point to web archive to reflect this
- - - - -
065b6373 by Andreas Tille at 2020-04-17T11:40:36+02:00
Deactivated watch file
- - - - -
ad969a18 by Andreas Tille at 2020-04-17T11:42:34+02:00
Document vanished homepage in README.Debian
- - - - -
d392970e by Andreas Tille at 2020-04-17T11:43:49+02:00
routine-update: Standards-Version: 4.5.0
- - - - -
1f7655b3 by Andreas Tille at 2020-04-17T11:43:49+02:00
routine-update: debhelper-compat 12
- - - - -
4bcbdf83 by Andreas Tille at 2020-04-17T11:43:54+02:00
R-U: Trailing whitespace in debian/control
- - - - -
0cfd17d4 by Andreas Tille at 2020-04-17T11:43:54+02:00
R-U: Trailing whitespace in debian/rules
- - - - -
86475f9c by Andreas Tille at 2020-04-17T11:43:54+02:00
routine-update: Add salsa-ci file
- - - - -
de658b15 by Andreas Tille at 2020-04-17T11:43:54+02:00
routine-update: Rules-Requires-Root: no
- - - - -
ae009835 by Andreas Tille at 2020-04-17T11:43:55+02:00
Set field Upstream-Contact in debian/copyright.
- - - - -
a11accf6 by Andreas Tille at 2020-04-17T11:45:00+02:00
Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright).
- - - - -
331cf08c by Andreas Tille at 2020-04-17T11:45:50+02:00
routine-update: Ready to upload to unstable
- - - - -
9 changed files:
- debian/README.Debian
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/README.Debian
=====================================
@@ -1,6 +1,12 @@
soap2 for Debian
----------------
-The authors of this package demand the amd64 platform.
+Upstream site vanished. Last seen on web archive
- -- Steffen Moeller <moeller at debian.org> Sat, 21 Apr 2012 22:45:08 +0200
+ https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html
+
+The latest upstream version
+ Release 2.21 , 02-14-2011
+was only in binary form and can not be packaged.
+
+ -- Andreas Tille <tille at debian.org> Fri, 17 Apr 2020 11:38:18 +0200
=====================================
debian/changelog
=====================================
@@ -1,3 +1,20 @@
+soapaligner (2.20-4) unstable; urgency=medium
+
+ * Team upload.
+ * Homepage has vanished - point to web archive to reflect this
+ * Deactivated watch file
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 12 (routine-update)
+ * Remove trailing whitespace in debian/control (routine-update)
+ * Remove trailing whitespace in debian/rules (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Set field Upstream-Contact in debian/copyright.
+ * Remove obsolete field Contact from debian/upstream/metadata (already
+ present in machine-readable debian/copyright).
+
+ -- Andreas Tille <tille at debian.org> Fri, 17 Apr 2020 11:45:00 +0200
+
soapaligner (2.20-3) unstable; urgency=medium
* Team upload.
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -3,11 +3,12 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Steffen Moeller <moeller at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.1.4
+Build-Depends: debhelper-compat (= 12)
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/soapaligner
Vcs-Git: https://salsa.debian.org/med-team/soapaligner.git
-Homepage: http://soap.genomics.org.cn/soapaligner.html
+Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html
+Rules-Requires-Root: no
Package: soapaligner
Architecture: any-amd64 x32
@@ -15,7 +16,7 @@ Depends: ${shlibs:Depends},
${misc:Depends}
Description: aligner of short reads of next generation sequencers
This package addresses a common problem in bioinformatics that has
- become routine now also in clinical research: the assembly and
+ become routine now also in clinical research: the assembly and
comparison of the very long genomic DNA sequences from many
short reads that the machines provide.
.
=====================================
debian/copyright
=====================================
@@ -1,6 +1,7 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: SOAPaligner
Source: http://soap.genomics.org.cn/soapaligner.html
+Upstream-Contact: soap at genomics.org.cn
Files: *
Copyright: 2004 Wong Chi Kwong
=====================================
debian/rules
=====================================
@@ -11,4 +11,4 @@ export CXXFLAGS:=-flto $(shell dpkg-buildflags --get CXXFLAGS)
export LDFLAGS:=-Wl,-flto $(shell dpkg-buildflags --get LDFLAGS)
%:
- dh $@
+ dh $@
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,3 @@
-Contact: soap at genomics.org.cn
Reference:
DOI: 10.1093/bioinformatics/btn025
Eprint: http://bioinformatics.oxfordjournals.org/content/24/5/713.full.pdf+html
=====================================
debian/watch
=====================================
@@ -1,3 +1,7 @@
version=4
-http://soap.genomics.org.cn/soapaligner.html down/SOAPaligner-v(\d[.\d]+)-src.tar.gz
+# Upstream site vanished
+opts=dversionmangle=s/.*/0.No-Site/ \
+ https://people.debian.org/~eriberto/ FakeWatchNoUpstreamSiteForThisPackage-(\d\S+)\.gz
+
+# http://soap.genomics.org.cn/soapaligner.html down/SOAPaligner-v(\d[.\d]+)-src.tar.gz
View it on GitLab: https://salsa.debian.org/med-team/soapaligner/-/compare/afd7342c143f36f61905e4c9023b1bb902d54603...331cf08ce13bd48a121c95fe5e7b0fb4273b08a0
--
View it on GitLab: https://salsa.debian.org/med-team/soapaligner/-/compare/afd7342c143f36f61905e4c9023b1bb902d54603...331cf08ce13bd48a121c95fe5e7b0fb4273b08a0
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