Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a12eb631 by Andreas Tille at 2020-04-18T13:46:44+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,51 @@
-Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
+Last-Update: Sat, 18 Apr 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {covid-19,imaging} |
+ dcmtk | 175 | {covid-19,imaging} |
orthanc | 96 | {practice,covid-19,imaging} |
- gdcm | 43 | {imaging-dev} |
+ gdcm | 41 | {imaging-dev} |
orthanc-wsi | 37 | {practice,laboratory,imaging,his,covid-19,oncology} |
amide | 27 | {imaging} |
dcm2niix | 27 | {imaging} |
- dicomscope | 26 | {imaging} |
+ dicomscope | 27 | {imaging} |
dicom3tools | 25 | {imaging} |
+ gdcm | 25 | {imaging,covid-19} |
htsjdk | 25 | {bio-dev} |
- gdcm | 24 | {imaging,covid-19} |
gnumed-server | 20 | {practice,covid-19} |
ngs-sdk | 17 | {bio-dev} |
+ minc-tools | 14 | {imaging} |
adun.app | 13 | {bio} |
hunspell-en-med | 13 | {tools} |
king | 13 | {typesetting,imaging} |
- minc-tools | 13 | {imaging} |
openslide | 13 | {imaging} |
pixelmed | 13 | {imaging} |
invesalius | 12 | {imaging} |
+ plastimatch | 12 | {imaging} |
gasic | 11 | {cloud,bio} |
gdcm | 11 | {imaging-dev} |
- ncbi-entrez-direct | 11 | {bio} |
- plastimatch | 11 | {imaging} |
- vtk-dicom | 11 | {imaging} |
biosig4c++ | 10 | {imaging,physics} |
ea-utils | 10 | {bio} |
mia | 10 | {imaging} |
- staden | 10 | {bio} |
- insighttoolkit4 | 9 | {imaging-dev} |
+ ncbi-entrez-direct | 10 | {bio} |
+ vtk-dicom | 10 | {imaging} |
jebl2 | 9 | {bio-dev} |
librg-utils-perl | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
+ obitools | 9 | {bio} |
parsnp | 9 | {bio} |
tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
fitgcp | 8 | {bio,cloud} |
+ insighttoolkit4 | 8 | {imaging-dev} |
king-probe | 8 | {bio} |
mipe | 8 | {bio,cloud} |
- obitools | 8 | {bio} |
salmon | 8 | {bio} |
+ staden | 8 | {bio} |
biojava-live | 7 | {bio-dev} |
cgview | 7 | {bio} |
diamond-aligner | 7 | {bio,covid-19} |
ncbi-seg | 7 | {bio} |
- neobio | 7 | {cloud,bio} |
norsp | 7 | {bio} |
- paml | 7 | {bio} |
- psychopy | 7 | {psychology} |
arden | 6 | {cloud,bio} |
bppsuite | 6 | {bio} |
dazzdb | 6 | {bio} |
@@ -57,10 +54,13 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
lagan | 6 | {bio} |
melting | 6 | {bio,cloud} |
mrs | 6 | {bio} |
+ neobio | 6 | {cloud,bio} |
orthanc-webviewer | 6 | {imaging} |
+ paml | 6 | {bio} |
phast | 6 | {bio} |
piler | 6 | {bio} |
predictprotein | 6 | {bio} |
+ psychopy | 6 | {psychology} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
seqsero | 6 | {bio} |
@@ -135,6 +135,7 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
mapsembler2 | 4 | {bio,cloud} |
mauve-aligner | 4 | {bio} |
mlv-smile | 4 | {bio,cloud} |
+ nutsqlite | 4 | {tools} |
paraclu | 4 | {cloud,bio} |
perm | 4 | {bio,cloud} |
proalign | 4 | {bio-phylogeny,bio} |
@@ -166,7 +167,6 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mptp | 3 | {bio} |
- nutsqlite | 3 | {tools} |
openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
+Last-Update: Sat, 18 Apr 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -45,17 +45,20 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
picard-tools | 2.18.25 | 2.22.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
plink2 | 2.00~a3-200217 | 200409 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ pybel | 0.14.5 | 0.14.7 | Steffen Moeller | Andreas Tille | 2020-03-29 18:48:55+00
pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00
python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
python-bids-validator | 1.2.4 | 1.5.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
python-cgecore | 1.5.3 | 1.5.4 | Andreas Tille | Steffen Moeller | 2020-03-17 12:49:52+00
python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
python-deeptools | 3.4.2 | 3.4.3 | Steffen Moeller | Steffen Moeller | 2020-04-08 17:19:24+00
- python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200408.0579ac1 | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
+ python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200415.8ad590e | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
+ python-schema-salad | 5.0.20200302192450 | 5.0.20200416112825 | Michael R. Crusoe | Michael R. Crusoe | 2020-04-10 16:23:02+00
python-treetime | 0.7.1 | 0.7.5 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00
q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-04-17 08:33:47+00
+ qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
resfinder-db | 0.0+git20191001.149209d | 0.0+git20200408.0322c0d | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
@@ -63,11 +66,10 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
sra-sdk | 2.9.3 | 2.10.5 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
sumaclust | 1.0.35 | 1.0.36 | Andreas Tille,Pierre Gruet,Tim Booth | Pierre Gruet | 2020-04-09 09:50:24+00
- sumalibs | 1.0.35 | 1.0.36 | Andreas Tille | Andreas Tille | 2020-04-09 11:33:59+00
sumatra | 1.0.34 | 1.0.36 | Andreas Tille,Tim Booth | Andreas Tille | 2020-04-09 12:34:03+00
umis | 1.0.6 | 1.0.7 | Andreas Tille | Andreas Tille | 2020-01-27 07:34:12+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(65 rows)
+(67 rows)
source | id | severity | title
@@ -167,7 +169,6 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
kissplice | 936798 | serious | kissplice: Python2 removal in sid/bullseye
kma | 957408 | normal | kma: ftbfs with GCC-10
kmc | 954270 | important | kmc: arm64 autopkgtest time out
- lagan | 957415 | normal | lagan: ftbfs with GCC-10
libbpp-core | 957423 | normal | libbpp-core: ftbfs with GCC-10
libbpp-phyl | 957425 | normal | libbpp-phyl: ftbfs with GCC-10
libbpp-popgen | 957427 | normal | libbpp-popgen: ftbfs with GCC-10
@@ -198,7 +199,6 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
macs | 953323 | serious | src:macs: fails to migrate to testing for too long
macsyfinder | 933928 | normal | macsyfinder: Port to Python3 needed
macsyfinder | 936977 | serious | macsyfinder: Python2 removal in sid/bullseye
- mafft | 957512 | normal | mafft: ftbfs with GCC-10
mapsembler2 | 957519 | normal | mapsembler2: ftbfs with GCC-10
mcl | 957525 | normal | mcl: ftbfs with GCC-10
medicalterms | 602423 | important | hunspell-de-med: german dictionary unusable
@@ -240,7 +240,6 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
phast | 951660 | serious | src:phast: fails to migrate to testing for too long
phylip | 957681 | normal | phylip: ftbfs with GCC-10
phyml | 957679 | normal | phyml: ftbfs with GCC-10
- phyx | 957683 | normal | phyx: ftbfs with GCC-10
pixelmed | 706130 | normal | Add support for MammographyCADSR
pixelmed | 706132 | normal | javax.xml.transform.TransformerConfigurationException: Impossible de compiler la feuille de style
pixelmed | 706143 | normal | Missing DoseUtilityLogOfReportMultiple.png
@@ -314,12 +313,11 @@ Last-Update: Sat, 18 Apr 2020 01:42:03 +0000
tree-puzzle | 890790 | minor | tree-puzzle: Please provide autopkgtest
tree-puzzle | 951984 | serious | tree-puzzle: FTBFS: mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead."
treeviewx | 846481 | minor | src:treeviewx: Please remove statically linked code copy of libncl
- trinculo | 956945 | normal | trinculo FTCBFS: uses the build architecture compiler
unanimity | 938751 | serious | unanimity: Python2 removal in sid/bullseye
unanimity | 939506 | serious | unanimity ftbfs in unstable
vg | 957911 | normal | vg: ftbfs with GCC-10
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(249 rows)
+(245 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a12eb6312114c06e10620fa9f8ce7d3b8867a04b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a12eb6312114c06e10620fa9f8ce7d3b8867a04b
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