[med-svn] [Git][med-team/raxml][master] 6 commits: Provide /usr/bin/raxmlHPC-PTHREADS-AVX also on i386 to make gubbins tests work

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / raxml


Commits:
8cd36f49 by Andreas Tille at 2020-04-02T16:11:17+02:00
Provide /usr/bin/raxmlHPC-PTHREADS-AVX also on i386 to make gubbins tests work

- - - - -
8361fbe0 by Andreas Tille at 2020-04-02T16:11:47+02:00
routine-update: Standards-Version: 4.5.0

- - - - -
943e2b08 by Andreas Tille at 2020-04-02T16:11:51+02:00
routine-update: Add salsa-ci file

- - - - -
6514850f by Andreas Tille at 2020-04-02T16:11:51+02:00
routine-update: Rules-Requires-Root: no

- - - - -
833a0ef3 by Andreas Tille at 2020-04-02T16:11:58+02:00
Set upstream metadata fields: Repository, Repository-Browse.
- - - - -
c052e256 by Andreas Tille at 2020-04-02T16:14:13+02:00
routine-update: Ready to upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+raxml (8.2.12+dfsg-5) unstable; urgency=medium
+
+  * Provide /usr/bin/raxmlHPC-PTHREADS-AVX also on i386 to make gubbins
+    tests work (addresses gubbins bug #955006)
+  * Standards-Version: 4.5.0 (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Set upstream metadata fields: Repository, Repository-Browse.
+
+ -- Andreas Tille <tille at debian.org>  Thu, 02 Apr 2020 16:11:58 +0200
+
 raxml (8.2.12+dfsg-4) unstable; urgency=medium
 
   [ Michael R. Crusoe ]


=====================================
debian/control
=====================================
@@ -4,10 +4,11 @@ Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 12)
-Standards-Version: 4.4.1
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/raxml
 Vcs-Git: https://salsa.debian.org/med-team/raxml.git
 Homepage: http://www.exelixis-lab.org/
+Rules-Requires-Root: no
 
 Package: raxml
 Architecture: any


=====================================
debian/rules
=====================================
@@ -46,7 +46,7 @@ override_dh_install:
 ifeq (amd64,$(DEB_TARGET_ARCH_CPU))
 	dh_install debian/bin/raxmlHPC usr/bin
 else
-	mv debian/raxml/usr/bin/raxmlHPC-PTHREADS-AVX debian/raxml/usr/bin/raxmlHPC
+	dh_link usr/bin/raxmlHPC-PTHREADS-AVX usr/bin/raxmlHPC
 endif
 
 override_dh_installman:


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/upstream/metadata
=====================================
@@ -35,3 +35,5 @@ Registry:
 - Name: conda:bioconda
   Entry: raxml
 Bug-Database: https://github.com/stamatak/standard-RAxML/issues
+Repository: https://github.com/stamatak/standard-RAxML.git
+Repository-Browse: https://github.com/stamatak/standard-RAxML



View it on GitLab: https://salsa.debian.org/med-team/raxml/-/compare/c7bdb0b2323a52dc91566650a42d88112ef903e3...c052e256a71933f8292d00c8db1b84530048428f

-- 
View it on GitLab: https://salsa.debian.org/med-team/raxml/-/compare/c7bdb0b2323a52dc91566650a42d88112ef903e3...c052e256a71933f8292d00c8db1b84530048428f
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