Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8d0a3fbd by Andreas Tille at 2020-04-19T10:45:03+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,68 +1,69 @@
-Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
+Last-Update: Sun, 19 Apr 2020 10:40:17 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging} |
+ dcmtk | 179 | {covid-19,imaging} |
orthanc | 96 | {practice,covid-19,imaging} |
- gdcm | 41 | {imaging-dev} |
- orthanc-wsi | 37 | {practice,laboratory,imaging,his,covid-19,oncology} |
- amide | 27 | {imaging} |
- dcm2niix | 27 | {imaging} |
- dicomscope | 27 | {imaging} |
- dicom3tools | 25 | {imaging} |
- gdcm | 25 | {imaging,covid-19} |
+ gdcm | 40 | {imaging-dev} |
+ orthanc-wsi | 39 | {practice,laboratory,imaging,his,covid-19,oncology} |
+ amide | 29 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ dcm2niix | 28 | {imaging} |
+ dicom3tools | 26 | {imaging} |
+ gdcm | 26 | {imaging,covid-19} |
htsjdk | 25 | {bio-dev} |
- gnumed-server | 20 | {practice,covid-19} |
+ gnumed-server | 21 | {practice,covid-19} |
ngs-sdk | 17 | {bio-dev} |
- minc-tools | 14 | {imaging} |
- adun.app | 13 | {bio} |
+ minc-tools | 15 | {imaging} |
+ adun.app | 14 | {bio} |
+ king | 14 | {typesetting,imaging} |
+ openslide | 14 | {imaging} |
+ pixelmed | 14 | {imaging} |
+ plastimatch | 14 | {imaging} |
hunspell-en-med | 13 | {tools} |
- king | 13 | {typesetting,imaging} |
- openslide | 13 | {imaging} |
- pixelmed | 13 | {imaging} |
- invesalius | 12 | {imaging} |
- plastimatch | 12 | {imaging} |
- gasic | 11 | {cloud,bio} |
+ invesalius | 13 | {imaging} |
+ gasic | 12 | {cloud,bio} |
+ biosig4c++ | 11 | {imaging,physics} |
gdcm | 11 | {imaging-dev} |
- biosig4c++ | 10 | {imaging,physics} |
+ mia | 11 | {imaging} |
+ vtk-dicom | 11 | {imaging} |
ea-utils | 10 | {bio} |
- mia | 10 | {imaging} |
ncbi-entrez-direct | 10 | {bio} |
- vtk-dicom | 10 | {imaging} |
- jebl2 | 9 | {bio-dev} |
+ parsnp | 10 | {bio} |
+ fitgcp | 9 | {bio,cloud} |
librg-utils-perl | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
obitools | 9 | {bio} |
- parsnp | 9 | {bio} |
+ staden | 9 | {bio} |
tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
- fitgcp | 8 | {bio,cloud} |
+ biojava-live | 8 | {bio-dev} |
+ cgview | 8 | {bio} |
insighttoolkit4 | 8 | {imaging-dev} |
king-probe | 8 | {bio} |
mipe | 8 | {bio,cloud} |
- salmon | 8 | {bio} |
- staden | 8 | {bio} |
- biojava-live | 7 | {bio-dev} |
- cgview | 7 | {bio} |
diamond-aligner | 7 | {bio,covid-19} |
+ jebl2 | 7 | {bio-dev} |
+ lagan | 7 | {bio} |
ncbi-seg | 7 | {bio} |
+ neobio | 7 | {cloud,bio} |
norsp | 7 | {bio} |
+ paml | 7 | {bio} |
+ psychopy | 7 | {psychology} |
+ rambo-k | 7 | {bio} |
+ salmon | 7 | {bio} |
arden | 6 | {cloud,bio} |
bppsuite | 6 | {bio} |
dazzdb | 6 | {bio} |
ecopcr | 6 | {bio} |
fastlink | 6 | {bio,cloud} |
- lagan | 6 | {bio} |
melting | 6 | {bio,cloud} |
mrs | 6 | {bio} |
- neobio | 6 | {cloud,bio} |
orthanc-webviewer | 6 | {imaging} |
- paml | 6 | {bio} |
phast | 6 | {bio} |
piler | 6 | {bio} |
predictprotein | 6 | {bio} |
- psychopy | 6 | {psychology} |
+ pscan-tfbs | 6 | {bio} |
pymia | 6 | {imaging-dev} |
- rambo-k | 6 | {bio} |
seqsero | 6 | {bio} |
sibsim4 | 6 | {cloud,bio} |
sigma-align | 6 | {bio-phylogeny,cloud,bio} |
@@ -97,7 +98,6 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
poretools | 5 | {bio} |
prime-phylo | 5 | {bio,cloud} |
pscan-chip | 5 | {bio} |
- pscan-tfbs | 5 | {bio} |
radiant | 5 | {bio} |
seer | 5 | {bio} |
seqtools | 5 | {bio} |
@@ -105,7 +105,6 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
squizz | 5 | {cloud,bio} |
transtermhp | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
- vsearch | 5 | {bio} |
abacas | 4 | {bio} |
alter-sequence-alignment | 4 | {bio} |
assemblytics | 4 | {bio} |
@@ -113,7 +112,6 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
bandage | 4 | {bio} |
bart-view | 4 | {imaging} |
beads | 4 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
brig | 4 | {bio} |
centrifuge | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
@@ -135,7 +133,6 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
mapsembler2 | 4 | {bio,cloud} |
mauve-aligner | 4 | {bio} |
mlv-smile | 4 | {bio,cloud} |
- nutsqlite | 4 | {tools} |
paraclu | 4 | {cloud,bio} |
perm | 4 | {bio,cloud} |
proalign | 4 | {bio-phylogeny,bio} |
@@ -152,8 +149,10 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
soapsnp | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
+ tnseq-transit | 4 | {covid-19,bio} |
tracetuner | 4 | {bio} |
transrate-tools | 4 | {bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
canu | 3 | {bio} |
delly | 3 | {covid-19,bio} |
elph | 3 | {bio} |
@@ -167,6 +166,7 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mptp | 3 | {bio} |
+ nutsqlite | 3 | {tools} |
openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
@@ -189,8 +189,7 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
spaced | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
- tnseq-transit | 3 | {covid-19,bio} |
- varscan | 3 | {bio} |
+ vsearch | 3 | {bio} |
yaha | 3 | {bio} |
zalign | 3 | {bio,cloud} |
atropos | 2 | {bio} |
@@ -215,6 +214,7 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
sweed | 2 | {bio} |
thesias | 2 | {bio,covid-19} |
tvc | 2 | {bio} |
+ varscan | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
biobambam2 | 1 | {covid-19,bio-dev,bio} |
biosig4c++ | 1 | {imaging-dev,physics} |
@@ -250,7 +250,6 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
emmax | 0 | {bio} |
- fasta3 | 0 | {covid-19,bio} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
@@ -298,8 +297,8 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
papyrus | 0 | {imaging-dev} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -313,5 +312,5 @@ Last-Update: Sun, 19 Apr 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(341 rows)
+(340 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8d0a3fbdbf8e9164fb36d18a1df41db2db02ad04
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8d0a3fbdbf8e9164fb36d18a1df41db2db02ad04
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