[med-svn] [Git][med-team/sra-sdk][upstream] New upstream version 2.10.4+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / sra-sdk


Commits:
bdf0081d by Andreas Tille at 2020-03-04T11:28:37+01:00
New upstream version 2.10.4+dfsg
- - - - -


5 changed files:

- CHANGES.md
- README.md
- build/Makefile.vers
- shared/toolkit.vers
- shared/toolkit.vers.h


Changes:

=====================================
CHANGES.md
=====================================
@@ -1,6 +1,18 @@
 # NCBI External Developer Release:
 
 
+## SRA Toolkit 2.10.4
+**February 26, 2020**
+
+  **kns, sra-tools:**: fixed errors when using ngc file
+
+
+## SRA Toolkit 2.10.3
+**February 18, 2020**
+
+  **sraxf, fasterq-dump, fastq-dump, sam-dump**: fixed a problem resulting in a segmentation fault 
+
+
 ## SRA Toolkit 2.10.2
 **January 15, 2020**
 


=====================================
README.md
=====================================
@@ -4,7 +4,7 @@
 email: sra at ncbi.nlm.nih.gov
 
 ### Download
-Visit our [download page](https://github.com/ncbi/sra-tools/wiki/Downloads) for pre-built binaries.
+Visit our [download page](https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit) for pre-built binaries.
 
 ### Change Log
 Please check the CHANGES.md file for change history.
@@ -14,6 +14,14 @@ The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for
 using data in the INSDC Sequence Read Archives.
 
 ### ANNOUNCEMENT:
+
+SRA Toolkit 2.10.3
+sraxf, fasterq-dump, fastq-dump, sam-dump: fixed a problem resulting in a segmentation fault
+
+Release 2.10.2 of `sra-tools` provides access to all the **public and controlled-access dbGaP** of SRA in the AWS and GCP environments _(Linux only for this release)_. This vast archive's original submission format and SRA-formatted data can both be accessed and computed on these clouds, eliminating the need to download from NCBI FTP as well as improving performance.
+
+The `prefetch` tool also retrieves **original submission files** in addition to ETL data for public and controlled-access dbGaP data.
+
 With release 2.10.0 of `sra-tools` we have added cloud-native operation for AWS and GCP environments _(Linux only for this release)_, for use with the public SRA. `prefetch` is capable of retrieving original submission files in addition to ETL data.
 
 With release 2.9.1 of `sra-tools` we have finally made available the tool `fasterq-dump`, a replacement for the much older `fastq-dump` tool. As its name implies, it runs faster, and is better suited for large-scale conversion of SRA objects into FASTQ files that are common on sites with enough disk space for temporary files. `fasterq-dump` is multi-threaded and performs bulk joins in a way that improves performance as compared to `fastq-dump`, which performs joins on a per-record basis _(and is single-threaded)_.


=====================================
build/Makefile.vers
=====================================
@@ -23,4 +23,4 @@
 # ===========================================================================
 
 # SRA-TOOLS and library version
-VERSION = 2.10.2
+VERSION = 2.10.4


=====================================
shared/toolkit.vers
=====================================
@@ -1 +1 @@
-2.10.2
+2.10.4


=====================================
shared/toolkit.vers.h
=====================================
@@ -1 +1 @@
-#define TOOLKIT_VERS 0x020A0002
+#define TOOLKIT_VERS 0x020A0004



View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/commit/bdf0081d3363e836e27474f0898a55f3ca7562f3

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