[med-svn] [Git][med-team/hisat2][master] 13 commits: Use the libsimde-dev package instead of our code copy.

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / hisat2


Commits:
b522577d by Michael R. Crusoe at 2020-04-19T19:03:13+02:00
Use the libsimde-dev package instead of our code copy.

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6a7760ab by Michael R. Crusoe at 2020-04-19T19:03:13+02:00
routine-update: Standards-Version: 4.5.0

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c5f5afab by Michael R. Crusoe at 2020-04-19T19:03:13+02:00
routine-update: Add salsa-ci file

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3bbba4b9 by Michael R. Crusoe at 2020-04-19T19:03:13+02:00
routine-update: Rules-Requires-Root: no

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aa522f55 by Michael R. Crusoe at 2020-04-19T19:03:14+02:00
Upstream moved to GitHub

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21cc27e3 by Michael R. Crusoe at 2020-04-19T19:03:14+02:00
Use the HISAT2 citation instead of the HISAT paper

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77c7ef83 by Michael R. Crusoe at 2020-04-19T19:54:48+02:00
routine-update: New upstream version

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0757bbf4 by Michael R. Crusoe at 2020-04-19T19:54:51+02:00
New upstream version 2.2.0
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0dd8e06d by Michael R. Crusoe at 2020-04-19T19:55:40+02:00
Update upstream source from tag 'upstream/2.2.0'

Update to upstream version '2.2.0'
with Debian dir d0fddf93d01d715265b52e3ddceac332d0e32257
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7468f313 by Michael R. Crusoe at 2020-04-19T20:07:47+02:00
Freshen the patches

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3c722592 by Michael R. Crusoe at 2020-04-19T20:11:44+02:00
test

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1b4fac2f by Michael R. Crusoe at 2020-04-19T20:26:20+02:00
Added patch to fix the manual path

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a63d2420 by Michael R. Crusoe at 2020-04-19T23:04:47+02:00
2.2.0-1

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24 changed files:

- + .gitattributes
- + .gitignore
- + CMakeLists.txt
- + HISAT2-genotype.png
- MANUAL
- Makefile
- + README.md
- TUTORIAL
- VERSION
- + _config.yml
- aligner_result.cpp
- aligner_result.h
- aligner_seed2.h
- aligner_sw.cpp
- aln_sink.cpp
- aln_sink.h
- alphabet.cpp
- + bit_packed_array.cpp
- + bit_packed_array.h
- blockwise_sa.h
- − classifier_li.h
- debian/changelog
- debian/control
- − debian/include/simde/check.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hisat2/-/compare/c58e7ff0e0a28f2651eea41146ee7b3cc49aa4ab...a63d242098083b0f09fb681b7e7d875e7ad18741

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View it on GitLab: https://salsa.debian.org/med-team/hisat2/-/compare/c58e7ff0e0a28f2651eea41146ee7b3cc49aa4ab...a63d242098083b0f09fb681b7e7d875e7ad18741
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