Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5e024c27 by Andreas Tille at 2020-04-22T13:45:56+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,36 +1,36 @@
-Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
+Last-Update: Wed, 22 Apr 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {covid-19,imaging} |
- orthanc | 95 | {practice,covid-19,imaging} |
- gdcm | 40 | {imaging-dev} |
- orthanc-wsi | 38 | {practice,laboratory,imaging,his,covid-19,oncology} |
- amide | 30 | {imaging} |
- dicom3tools | 29 | {imaging} |
- dicomscope | 29 | {imaging} |
- dcm2niix | 28 | {imaging} |
- gdcm | 24 | {imaging,covid-19} |
- htsjdk | 22 | {bio-dev} |
+ dcmtk | 175 | {covid-19,imaging} |
+ orthanc | 94 | {practice,covid-19,imaging} |
+ gdcm | 42 | {imaging-dev} |
+ orthanc-wsi | 37 | {practice,laboratory,imaging,his,covid-19,oncology} |
+ dicom3tools | 31 | {imaging} |
+ dicomscope | 31 | {imaging} |
+ amide | 29 | {imaging} |
+ dcm2niix | 29 | {imaging} |
+ gdcm | 27 | {imaging,covid-19} |
+ htsjdk | 24 | {bio-dev} |
gnumed-server | 21 | {practice,covid-19} |
+ minc-tools | 17 | {imaging} |
+ openslide | 17 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
+ pixelmed | 16 | {imaging} |
invesalius | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
+ king | 15 | {typesetting,imaging} |
+ plastimatch | 15 | {imaging} |
adun.app | 14 | {bio} |
- king | 14 | {typesetting,imaging} |
- openslide | 14 | {imaging} |
+ biosig4c++ | 13 | {imaging,physics} |
hunspell-en-med | 13 | {tools} |
- pixelmed | 13 | {imaging} |
- plastimatch | 13 | {imaging} |
- biosig4c++ | 11 | {imaging,physics} |
+ vtk-dicom | 13 | {imaging} |
+ mia | 12 | {imaging} |
gasic | 11 | {cloud,bio} |
gdcm | 11 | {imaging-dev} |
- mia | 11 | {imaging} |
- vtk-dicom | 11 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
ea-utils | 9 | {bio} |
jebl2 | 9 | {bio-dev} |
ncbi-entrez-direct | 9 | {bio} |
- ngs-sdk | 9 | {bio-dev} |
obitools | 9 | {bio} |
parsnp | 9 | {bio} |
staden | 9 | {bio} |
@@ -44,11 +44,9 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
king-probe | 7 | {bio} |
neobio | 7 | {cloud,bio} |
paml | 7 | {bio} |
- psychopy | 7 | {psychology} |
salmon | 7 | {bio} |
ampliconnoise | 6 | {bio,cloud} |
cluster3 | 6 | {bio} |
- dazzdb | 6 | {bio} |
diamond-aligner | 6 | {bio,covid-19} |
freebayes | 6 | {bio} |
freecontact | 6 | {bio,cloud} |
@@ -59,7 +57,6 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
ncbi-seg | 6 | {bio} |
norsp | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
- phast | 6 | {bio} |
piler | 6 | {bio} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
@@ -70,17 +67,18 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
arden | 5 | {cloud,bio} |
bandage | 5 | {bio} |
biomaj3-cli | 5 | {cloud} |
- biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
bppsuite | 5 | {bio} |
centrifuge | 5 | {bio} |
cgview | 5 | {bio} |
codonw | 5 | {bio} |
+ dazzdb | 5 | {bio} |
ecopcr | 5 | {bio} |
edtsurf | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domalign | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
+ harvest-tools | 5 | {bio} |
indelible | 5 | {bio} |
jellyfish1 | 5 | {bio} |
lagan | 5 | {bio} |
@@ -88,11 +86,12 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
maqview | 5 | {bio} |
mencal | 5 | {tools} |
microbegps | 5 | {bio} |
+ phast | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
placnet | 5 | {bio} |
- poretools | 5 | {bio} |
predictprotein | 5 | {bio} |
prime-phylo | 5 | {bio,cloud} |
+ psychopy | 5 | {psychology} |
seer | 5 | {bio} |
seqsero | 5 | {bio} |
seqtools | 5 | {bio} |
@@ -105,6 +104,7 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
baitfisher | 4 | {bio} |
bart-view | 4 | {imaging} |
beads | 4 | {bio} |
+ biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio,bio-dev} |
bitseq | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
@@ -118,8 +118,6 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
embassy-domsearch | 4 | {bio,cloud} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- ghmm | 4 | {bio} |
- harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
@@ -127,11 +125,12 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
libsmithwaterman | 4 | {bio} |
mapsembler2 | 4 | {bio,cloud} |
mauve-aligner | 4 | {bio} |
- mlv-smile | 4 | {bio,cloud} |
murasaki | 4 | {bio} |
+ openslide | 4 | {imaging-dev} |
paraclu | 4 | {cloud,bio} |
perm | 4 | {bio,cloud} |
phybin | 4 | {bio} |
+ poretools | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
probabel | 4 | {bio,cloud} |
pscan-chip | 4 | {bio} |
@@ -156,6 +155,7 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
canu | 3 | {bio} |
elph | 3 | {bio} |
estscan | 3 | {bio} |
+ ghmm | 3 | {bio} |
hinge | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
lamarc | 3 | {bio} |
@@ -164,13 +164,12 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mhap | 3 | {bio,bio-ngs} |
+ mlv-smile | 3 | {bio,cloud} |
mptp | 3 | {bio} |
nutsqlite | 3 | {tools} |
- openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
- phipack | 3 | {bio} |
prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
@@ -191,7 +190,6 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
surankco | 3 | {bio} |
vsearch | 3 | {bio} |
yaha | 3 | {bio} |
- atropos | 2 | {bio} |
beast2-mcmc | 2 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
cufflinks | 2 | {bio,cloud} |
@@ -202,6 +200,7 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
logol | 2 | {bio} |
nanook | 2 | {bio} |
pal2nal | 2 | {bio} |
+ phipack | 2 | {bio} |
pilon | 2 | {bio} |
rampler | 2 | {bio} |
skesa | 2 | {bio} |
@@ -211,6 +210,7 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
tvc | 2 | {bio} |
varscan | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
+ atropos | 1 | {bio} |
biobambam2 | 1 | {covid-19,bio-dev,bio} |
biosig4c++ | 1 | {imaging-dev,physics} |
blasr | 1 | {bio,bio-ngs} |
@@ -226,6 +226,7 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
+ oscar | 1 | {tools,practice,data} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
@@ -236,7 +237,6 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
- thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
tree-puzzle | 1 | {bio-phylogeny,cloud,bio} |
acedb | 0 | {bio,cloud} |
@@ -291,12 +291,11 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
- oscar | 0 | {tools,practice,data} |
papyrus | 0 | {imaging-dev} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -304,6 +303,7 @@ Last-Update: Wed, 22 Apr 2020 01:42:03 +0000
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
+ thesias | 0 | {bio,covid-19} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
volpack | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5e024c27db166e7c8f22f580c09eca83ef432237
--
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