Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
6f27ce7d by Andreas Tille at 2020-04-23T13:45:49+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,190 +1,194 @@
-Last-Update: Thu, 23 Apr 2020 01:42:03 +0000
+Last-Update: Thu, 23 Apr 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging} |
- orthanc | 94 | {practice,covid-19,imaging} |
+ dcmtk | 172 | {covid-19,imaging} |
+ orthanc | 93 | {practice,covid-19,imaging} |
gdcm | 42 | {imaging-dev} |
orthanc-wsi | 37 | {practice,laboratory,imaging,his,covid-19,oncology} |
- dicom3tools | 31 | {imaging} |
- dicomscope | 31 | {imaging} |
- amide | 29 | {imaging} |
- dcm2niix | 29 | {imaging} |
- gdcm | 27 | {imaging,covid-19} |
- htsjdk | 24 | {bio-dev} |
- gnumed-server | 21 | {practice,covid-19} |
- minc-tools | 17 | {imaging} |
- openslide | 17 | {imaging} |
- ngs-sdk | 16 | {bio-dev} |
- pixelmed | 16 | {imaging} |
- invesalius | 15 | {imaging} |
- king | 15 | {typesetting,imaging} |
- plastimatch | 15 | {imaging} |
+ dicom3tools | 34 | {imaging} |
+ dicomscope | 33 | {imaging} |
+ amide | 31 | {imaging} |
+ dcm2niix | 31 | {imaging} |
+ gdcm | 31 | {imaging,covid-19} |
+ htsjdk | 25 | {bio-dev} |
+ gnumed-server | 20 | {practice,covid-19} |
+ openslide | 20 | {imaging} |
+ minc-tools | 19 | {imaging} |
+ pixelmed | 19 | {imaging} |
+ king | 18 | {typesetting,imaging} |
+ ngs-sdk | 17 | {bio-dev} |
+ plastimatch | 17 | {imaging} |
+ invesalius | 16 | {imaging} |
+ biosig4c++ | 15 | {imaging,physics} |
+ hunspell-en-med | 15 | {tools} |
+ mia | 15 | {imaging} |
+ vtk-dicom | 15 | {imaging} |
adun.app | 14 | {bio} |
- biosig4c++ | 13 | {imaging,physics} |
- hunspell-en-med | 13 | {tools} |
- vtk-dicom | 13 | {imaging} |
- mia | 12 | {imaging} |
gasic | 11 | {cloud,bio} |
gdcm | 11 | {imaging-dev} |
- ngs-sdk | 10 | {bio-dev} |
+ obitools | 11 | {bio} |
+ jebl2 | 10 | {bio-dev} |
ea-utils | 9 | {bio} |
- jebl2 | 9 | {bio-dev} |
+ insighttoolkit4 | 9 | {imaging-dev} |
+ mipe | 9 | {bio,cloud} |
ncbi-entrez-direct | 9 | {bio} |
- obitools | 9 | {bio} |
+ ngs-sdk | 9 | {bio-dev} |
parsnp | 9 | {bio} |
staden | 9 | {bio} |
tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
+ biojava-live | 8 | {bio-dev} |
fitgcp | 8 | {bio,cloud} |
- insighttoolkit4 | 8 | {imaging-dev} |
librg-utils-perl | 8 | {bio} |
- mipe | 8 | {bio,cloud} |
- biojava-live | 7 | {bio-dev} |
+ ampliconnoise | 7 | {bio,cloud} |
fastlink | 7 | {bio,cloud} |
+ jaligner | 7 | {bio} |
king-probe | 7 | {bio} |
neobio | 7 | {cloud,bio} |
paml | 7 | {bio} |
salmon | 7 | {bio} |
- ampliconnoise | 6 | {bio,cloud} |
+ alter-sequence-alignment | 6 | {bio} |
+ arden | 6 | {cloud,bio} |
+ biomaj3-cli | 6 | {cloud} |
+ bppsuite | 6 | {bio} |
+ cgview | 6 | {bio} |
cluster3 | 6 | {bio} |
+ codonw | 6 | {bio} |
+ dazzdb | 6 | {bio} |
+ delly | 6 | {covid-19,bio} |
diamond-aligner | 6 | {bio,covid-19} |
+ ecopcr | 6 | {bio} |
+ edtsurf | 6 | {bio} |
+ embassy-domainatrix | 6 | {cloud,bio} |
freebayes | 6 | {bio} |
freecontact | 6 | {bio,cloud} |
- jaligner | 6 | {bio} |
+ indelible | 6 | {bio} |
libncl | 6 | {bio} |
melting | 6 | {bio,cloud} |
mrs | 6 | {bio} |
ncbi-seg | 6 | {bio} |
norsp | 6 | {bio} |
- orthanc-webviewer | 6 | {imaging} |
+ phast | 6 | {bio} |
piler | 6 | {bio} |
+ prime-phylo | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
+ seer | 6 | {bio} |
+ seqsero | 6 | {bio} |
sibsim4 | 6 | {cloud,bio} |
sigma-align | 6 | {bio-phylogeny,cloud,bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
anfo | 5 | {cloud,bio} |
- arden | 5 | {cloud,bio} |
bandage | 5 | {bio} |
- biomaj3-cli | 5 | {cloud} |
+ beads | 5 | {bio} |
+ biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- bppsuite | 5 | {bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ bitseq | 5 | {bio} |
centrifuge | 5 | {bio} |
- cgview | 5 | {bio} |
- codonw | 5 | {bio} |
- dazzdb | 5 | {bio} |
- ecopcr | 5 | {bio} |
- edtsurf | 5 | {bio} |
- embassy-domainatrix | 5 | {cloud,bio} |
+ clonalorigin | 5 | {bio} |
+ daligner | 5 | {bio,bio-ngs} |
embassy-domalign | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
harvest-tools | 5 | {bio} |
- indelible | 5 | {bio} |
jellyfish1 | 5 | {bio} |
lagan | 5 | {bio} |
libminc | 5 | {imaging-dev} |
+ mapsembler2 | 5 | {bio,cloud} |
maqview | 5 | {bio} |
mencal | 5 | {tools} |
microbegps | 5 | {bio} |
- phast | 5 | {bio} |
+ orthanc-webviewer | 5 | {imaging} |
+ paraclu | 5 | {cloud,bio} |
+ phybin | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
- prime-phylo | 5 | {bio,cloud} |
+ probabel | 5 | {bio,cloud} |
+ pscan-tfbs | 5 | {bio} |
psychopy | 5 | {psychology} |
- seer | 5 | {bio} |
- seqsero | 5 | {bio} |
+ radiant | 5 | {bio} |
+ rdp-alignment | 5 | {bio} |
+ rdp-readseq | 5 | {bio} |
+ repeatmasker-recon | 5 | {bio} |
+ saint | 5 | {bio} |
seqtools | 5 | {bio} |
+ sickle | 5 | {bio} |
squizz | 5 | {cloud,bio} |
+ transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
+ zalign | 5 | {bio,cloud} |
abacas | 4 | {bio} |
- alter-sequence-alignment | 4 | {bio} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bart-view | 4 | {imaging} |
- beads | 4 | {bio} |
- biomaj3-daemon | 4 | {bio} |
- bio-tradis | 4 | {bio,bio-dev} |
- bitseq | 4 | {bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
clonalframeml | 4 | {bio,covid-19} |
- clonalorigin | 4 | {bio} |
- daligner | 4 | {bio,bio-ngs} |
dascrubber | 4 | {bio} |
- delly | 4 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
dwgsim | 4 | {bio} |
- embassy-domsearch | 4 | {bio,cloud} |
+ estscan | 4 | {bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
ipig | 4 | {bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
libdivsufsort | 4 | {bio-dev} |
+ libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
libsmithwaterman | 4 | {bio} |
- mapsembler2 | 4 | {bio,cloud} |
mauve-aligner | 4 | {bio} |
+ mhap | 4 | {bio,bio-ngs} |
murasaki | 4 | {bio} |
- openslide | 4 | {imaging-dev} |
- paraclu | 4 | {cloud,bio} |
perm | 4 | {bio,cloud} |
- phybin | 4 | {bio} |
poretools | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
- probabel | 4 | {bio,cloud} |
+ prottest | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
- pscan-tfbs | 4 | {bio} |
- radiant | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- rdp-readseq | 4 | {bio} |
relion | 4 | {bio} |
- repeatmasker-recon | 4 | {bio} |
- saint | 4 | {bio} |
+ roguenarok | 4 | {bio} |
scythe | 4 | {bio} |
- sickle | 4 | {bio} |
+ sga | 4 | {bio} |
+ soapsnp | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
tnseq-transit | 4 | {covid-19,bio} |
tracetuner | 4 | {bio} |
- transrate-tools | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ biosig4c++ | 3 | {imaging-dev,physics} |
brig | 3 | {bio} |
canu | 3 | {bio} |
elph | 3 | {bio} |
- estscan | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
+ kma | 3 | {bio} |
+ kmerresistance | 3 | {bio} |
lamarc | 3 | {bio} |
libgff | 3 | {bio-dev} |
- libpal-java | 3 | {bio-dev} |
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
- mhap | 3 | {bio,bio-ngs} |
mlv-smile | 3 | {bio,cloud} |
mptp | 3 | {bio} |
nutsqlite | 3 | {tools} |
+ openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
- prottest | 3 | {bio-phylogeny,bio} |
+ pilon | 3 | {bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
quorum | 3 | {bio} |
- roguenarok | 3 | {bio} |
rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
samblaster | 3 | {bio,covid-19} |
scrm | 3 | {bio} |
segemehl | 3 | {bio} |
seqmagick | 3 | {covid-19,bio} |
- sga | 3 | {bio} |
snap-aligner | 3 | {bio} |
soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
spaced | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
@@ -192,16 +196,17 @@ Last-Update: Thu, 23 Apr 2020 01:42:03 +0000
yaha | 3 | {bio} |
beast2-mcmc | 2 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
+ ctn | 2 | {imaging-dev} |
cufflinks | 2 | {bio,cloud} |
elastix | 2 | {imaging} |
getdata | 2 | {bio} |
- kma | 2 | {bio} |
- kmerresistance | 2 | {bio} |
+ libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
+ maxflow | 2 | {imaging-dev} |
nanook | 2 | {bio} |
+ ngs-sdk | 2 | {bio-dev} |
pal2nal | 2 | {bio} |
phipack | 2 | {bio} |
- pilon | 2 | {bio} |
rampler | 2 | {bio} |
skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
@@ -212,21 +217,19 @@ Last-Update: Thu, 23 Apr 2020 01:42:03 +0000
velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
biobambam2 | 1 | {covid-19,bio-dev,bio} |
- biosig4c++ | 1 | {imaging-dev,physics} |
blasr | 1 | {bio,bio-ngs} |
blimps | 1 | {bio} |
- ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
+ libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
- maxflow | 1 | {imaging-dev} |
- ngs-sdk | 1 | {bio-dev} |
+ libxdf | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
oscar | 1 | {tools,practice,data} |
+ papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
@@ -236,9 +239,11 @@ Last-Update: Thu, 23 Apr 2020 01:42:03 +0000
samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
+ simpleitk | 1 | {imaging-dev} |
spaln | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
tree-puzzle | 1 | {bio-phylogeny,cloud,bio} |
+ volpack | 1 | {imaging-dev} |
acedb | 0 | {bio,cloud} |
augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
@@ -271,7 +276,6 @@ Last-Update: Thu, 23 Apr 2020 01:42:03 +0000
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
- libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
libpll | 0 | {bio-dev} |
@@ -279,7 +283,6 @@ Last-Update: Thu, 23 Apr 2020 01:42:03 +0000
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
- libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
@@ -291,22 +294,19 @@ Last-Update: Thu, 23 Apr 2020 01:42:03 +0000
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
- papyrus | 0 | {imaging-dev} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
thesias | 0 | {bio,covid-19} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
- volpack | 0 | {imaging-dev} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6f27ce7df271e690e51b781a8dc41651f0c63434
--
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