[med-svn] [Git][med-team/python-nanoget][master] Fix description
Andreas Tille
gitlab at salsa.debian.org
Fri Apr 24 15:10:24 BST 2020
Andreas Tille pushed to branch master at Debian Med / python-nanoget
Commits:
4a499fc6 by Andreas Tille at 2020-04-24T16:10:16+02:00
Fix description
- - - - -
1 changed file:
- debian/control
Changes:
=====================================
debian/control
=====================================
@@ -28,12 +28,12 @@ Description: extract information from Oxford Nanopore sequencing data and alignm
.
Data can be presented in the following formats, using the following functions:
.
- * sorted bam file process_bam (bamfile, threads)
- * standard fastq file process_fastq_plain (fastqfile, 'threads')
- * fastq file with metadata from MinKNOW or Albacore process_fastq_rich
- (fastqfile)
- * sequencing_summary file generated by Albacore process_summary
- (sequencing_summary.txt, 'readtype')
+ * sorted bam file process_bam(bamfile, threads)
+ * standard fastq file process_fastq_plain(fastqfile, 'threads')
+ * fastq file with metadata from MinKNOW or Albacore
+ process_fastq_rich(fastqfile)
+ * sequencing_summary file generated by Albacore
+ process_summary(sequencing_summary.txt, 'readtype')
.
Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
returned as a pandas DataFrame with standardized headernames for
View it on GitLab: https://salsa.debian.org/med-team/python-nanoget/-/commit/4a499fc6404dfaae93f92f74604190c8dcd23f85
--
View it on GitLab: https://salsa.debian.org/med-team/python-nanoget/-/commit/4a499fc6404dfaae93f92f74604190c8dcd23f85
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