Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
7e8e1e0c by Andreas Tille at 2020-04-25T13:45:49+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,49 +1,50 @@
-Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
+Last-Update: Sat, 25 Apr 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging,covid-19} |
- orthanc | 91 | {covid-19,practice,imaging} |
- gdcm | 44 | {imaging-dev} |
- orthanc-wsi | 37 | {imaging,practice,laboratory,oncology,his,covid-19} |
- dicom3tools | 33 | {imaging} |
+ dcmtk | 174 | {imaging,covid-19} |
+ orthanc | 92 | {imaging,covid-19,practice} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 39 | {practice,covid-19,oncology,his,imaging,laboratory} |
dicomscope | 32 | {imaging} |
- amide | 31 | {imaging} |
- gdcm | 30 | {covid-19,imaging} |
- dcm2niix | 29 | {imaging} |
- htsjdk | 26 | {bio-dev} |
- gnumed-server | 19 | {practice,covid-19} |
+ dicom3tools | 31 | {imaging} |
+ amide | 30 | {imaging} |
+ gdcm | 29 | {covid-19,imaging} |
+ dcm2niix | 28 | {imaging} |
+ htsjdk | 28 | {bio-dev} |
+ gnumed-server | 19 | {covid-19,practice} |
openslide | 19 | {imaging} |
minc-tools | 18 | {imaging} |
pixelmed | 18 | {imaging} |
- king | 17 | {typesetting,imaging} |
- ngs-sdk | 17 | {bio-dev} |
+ king | 17 | {imaging,typesetting} |
hunspell-en-med | 16 | {tools} |
invesalius | 16 | {imaging} |
+ ngs-sdk | 16 | {bio-dev} |
plastimatch | 16 | {imaging} |
- biosig4c++ | 14 | {imaging,physics} |
+ adun.app | 14 | {bio} |
+ biosig4c++ | 14 | {physics,imaging} |
mia | 14 | {imaging} |
vtk-dicom | 14 | {imaging} |
- adun.app | 13 | {bio} |
- gasic | 11 | {cloud,bio} |
+ gasic | 11 | {bio,cloud} |
gdcm | 11 | {imaging-dev} |
obitools | 11 | {bio} |
jebl2 | 10 | {bio-dev} |
insighttoolkit4 | 9 | {imaging-dev} |
- mipe | 9 | {bio,cloud} |
+ mipe | 9 | {cloud,bio} |
ncbi-entrez-direct | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
parsnp | 9 | {bio} |
- tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
+ tree-puzzle | 9 | {bio-phylogeny,bio,cloud} |
biojava-live | 8 | {bio-dev} |
ea-utils | 8 | {bio} |
- fitgcp | 8 | {bio,cloud} |
- jaligner | 8 | {bio} |
+ fitgcp | 8 | {cloud,bio} |
librg-utils-perl | 8 | {bio} |
staden | 8 | {bio} |
- ampliconnoise | 7 | {cloud,bio} |
+ ampliconnoise | 7 | {bio,cloud} |
cgview | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
+ jaligner | 7 | {bio} |
+ melting | 7 | {bio,cloud} |
paml | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
arden | 6 | {cloud,bio} |
@@ -55,17 +56,16 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
diamond-aligner | 6 | {covid-19,bio} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
- embassy-domainatrix | 6 | {bio,cloud} |
+ embassy-domainatrix | 6 | {cloud,bio} |
freebayes | 6 | {bio} |
freecontact | 6 | {cloud,bio} |
indelible | 6 | {bio} |
king-probe | 6 | {bio} |
libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
- melting | 6 | {cloud,bio} |
mrs | 6 | {bio} |
ncbi-seg | 6 | {bio} |
- neobio | 6 | {bio,cloud} |
+ neobio | 6 | {cloud,bio} |
norsp | 6 | {bio} |
phast | 6 | {bio} |
piler | 6 | {bio} |
@@ -75,22 +75,22 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
salmon | 6 | {bio} |
seer | 6 | {bio} |
seqsero | 6 | {bio} |
- sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {cloud,bio-phylogeny,bio} |
- spread-phy | 6 | {bio-phylogeny,bio} |
+ sibsim4 | 6 | {cloud,bio} |
+ sigma-align | 6 | {cloud,bio,bio-phylogeny} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
anfo | 5 | {cloud,bio} |
bandage | 5 | {bio} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio-dev,bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
bitseq | 5 | {bio} |
centrifuge | 5 | {bio} |
clonalorigin | 5 | {bio} |
daligner | 5 | {bio,bio-ngs} |
delly | 5 | {bio,covid-19} |
embassy-domalign | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
harvest-tools | 5 | {bio} |
jellyfish1 | 5 | {bio} |
@@ -98,14 +98,14 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
mapsembler2 | 5 | {bio,cloud} |
maqview | 5 | {bio} |
mencal | 5 | {tools} |
- mhap | 5 | {bio,bio-ngs} |
+ mhap | 5 | {bio-ngs,bio} |
microbegps | 5 | {bio} |
paraclu | 5 | {bio,cloud} |
phybin | 5 | {bio} |
- phyutility | 5 | {cloud,bio} |
+ phyutility | 5 | {bio,cloud} |
placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
- probabel | 5 | {cloud,bio} |
+ probabel | 5 | {bio,cloud} |
pscan-tfbs | 5 | {bio} |
psychopy | 5 | {psychology} |
radiant | 5 | {bio} |
@@ -115,18 +115,18 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
saint | 5 | {bio} |
seqtools | 5 | {bio} |
sickle | 5 | {bio} |
- squizz | 5 | {cloud,bio} |
+ squizz | 5 | {bio,cloud} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
zalign | 5 | {cloud,bio} |
- abacas | 4 | {covid-19,bio} |
+ abacas | 4 | {bio,covid-19} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
brig | 4 | {bio} |
- clonalframeml | 4 | {bio,covid-19} |
+ clonalframeml | 4 | {covid-19,bio} |
dascrubber | 4 | {bio} |
dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
@@ -143,11 +143,12 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
libsmithwaterman | 4 | {bio} |
mauve-aligner | 4 | {bio} |
murasaki | 4 | {bio} |
+ nutsqlite | 4 | {tools} |
orthanc-webviewer | 4 | {imaging} |
- perm | 4 | {cloud,bio} |
+ perm | 4 | {bio,cloud} |
poretools | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
- prottest | 4 | {bio,bio-phylogeny} |
+ prottest | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
@@ -157,9 +158,9 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
soapsnp | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
- tnseq-transit | 4 | {bio,covid-19} |
+ tnseq-transit | 4 | {covid-19,bio} |
tracetuner | 4 | {bio} |
- biosig4c++ | 3 | {physics,imaging-dev} |
+ biosig4c++ | 3 | {imaging-dev,physics} |
canu | 3 | {bio} |
elph | 3 | {bio} |
ghmm | 3 | {bio} |
@@ -172,21 +173,20 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
metaphlan2 | 3 | {bio} |
mlv-smile | 3 | {bio,cloud} |
mptp | 3 | {bio} |
- nutsqlite | 3 | {tools} |
openslide | 3 | {imaging-dev} |
- orthanc-dicomweb | 3 | {covid-19,imaging} |
+ orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
pilon | 3 | {bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
quorum | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
+ rtax | 3 | {bio,cloud} |
runcircos-gui | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
+ samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
segemehl | 3 | {bio} |
- seqmagick | 3 | {covid-19,bio} |
+ seqmagick | 3 | {bio,covid-19} |
snap-aligner | 3 | {bio} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
@@ -210,13 +210,13 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
rampler | 2 | {bio} |
skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
- stringtie | 2 | {bio,covid-19} |
+ stringtie | 2 | {covid-19,bio} |
sweed | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {covid-19,bio} |
+ varscan | 2 | {bio,covid-19} |
velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
- biobambam2 | 1 | {bio-dev,covid-19,bio} |
+ biobambam2 | 1 | {bio,covid-19,bio-dev} |
blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
embassy-phylip | 1 | {bio,cloud} |
@@ -228,12 +228,12 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
libxdf | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
- oscar | 1 | {data,practice,tools} |
+ oscar | 1 | {practice,tools,data} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- python-py2bit | 1 | {bio-dev,bio} |
+ python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
@@ -242,10 +242,10 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
simpleitk | 1 | {imaging-dev} |
spaln | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {cloud,bio,bio-phylogeny} |
+ tree-puzzle | 1 | {bio,bio-phylogeny,cloud} |
volpack | 1 | {imaging-dev} |
acedb | 0 | {cloud,bio} |
- augur | 0 | {bio,covid-19} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -272,7 +272,7 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -287,17 +287,17 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
- multiqc | 0 | {bio,covid-19} |
+ multiqc | 0 | {covid-19,bio} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -305,10 +305,9 @@ Last-Update: Sat, 25 Apr 2020 01:42:03 +0000
smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
- trim-galore | 0 | {bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(338 rows)
+(337 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7e8e1e0c947aec75c7e64c258d0c073d3cdcde15
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7e8e1e0c947aec75c7e64c258d0c073d3cdcde15
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