Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d84a4809 by Andreas Tille at 2020-04-26T13:45:16+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,51 +1,51 @@
-Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
+Last-Update: Sun, 26 Apr 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 174 | {imaging,covid-19} |
- orthanc | 92 | {imaging,covid-19,practice} |
+ dcmtk | 171 | {covid-19,imaging} |
+ orthanc | 93 | {covid-19,practice,imaging} |
gdcm | 46 | {imaging-dev} |
- orthanc-wsi | 39 | {practice,covid-19,oncology,his,imaging,laboratory} |
+ orthanc-wsi | 39 | {laboratory,practice,imaging,covid-19,his,oncology} |
dicomscope | 32 | {imaging} |
dicom3tools | 31 | {imaging} |
amide | 30 | {imaging} |
- gdcm | 29 | {covid-19,imaging} |
+ htsjdk | 29 | {bio-dev} |
dcm2niix | 28 | {imaging} |
- htsjdk | 28 | {bio-dev} |
+ gdcm | 28 | {imaging,covid-19} |
gnumed-server | 19 | {covid-19,practice} |
openslide | 19 | {imaging} |
- minc-tools | 18 | {imaging} |
pixelmed | 18 | {imaging} |
- king | 17 | {imaging,typesetting} |
+ king | 17 | {typesetting,imaging} |
+ minc-tools | 17 | {imaging} |
+ plastimatch | 17 | {imaging} |
hunspell-en-med | 16 | {tools} |
invesalius | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- plastimatch | 16 | {imaging} |
adun.app | 14 | {bio} |
- biosig4c++ | 14 | {physics,imaging} |
- mia | 14 | {imaging} |
+ biosig4c++ | 14 | {imaging,physics} |
vtk-dicom | 14 | {imaging} |
+ mia | 13 | {imaging} |
gasic | 11 | {bio,cloud} |
- gdcm | 11 | {imaging-dev} |
obitools | 11 | {bio} |
+ gdcm | 10 | {imaging-dev} |
+ insighttoolkit4 | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
- insighttoolkit4 | 9 | {imaging-dev} |
mipe | 9 | {cloud,bio} |
ncbi-entrez-direct | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
parsnp | 9 | {bio} |
- tree-puzzle | 9 | {bio-phylogeny,bio,cloud} |
+ tree-puzzle | 9 | {bio-phylogeny,cloud,bio} |
biojava-live | 8 | {bio-dev} |
ea-utils | 8 | {bio} |
- fitgcp | 8 | {cloud,bio} |
- librg-utils-perl | 8 | {bio} |
- staden | 8 | {bio} |
- ampliconnoise | 7 | {bio,cloud} |
+ fitgcp | 8 | {bio,cloud} |
+ ampliconnoise | 7 | {cloud,bio} |
cgview | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
jaligner | 7 | {bio} |
+ librg-utils-perl | 7 | {bio} |
melting | 7 | {bio,cloud} |
paml | 7 | {bio} |
+ staden | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
arden | 6 | {cloud,bio} |
biomaj3-cli | 6 | {cloud} |
@@ -53,7 +53,7 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
cluster3 | 6 | {bio} |
codonw | 6 | {bio} |
dazzdb | 6 | {bio} |
- diamond-aligner | 6 | {covid-19,bio} |
+ diamond-aligner | 6 | {bio,covid-19} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
embassy-domainatrix | 6 | {cloud,bio} |
@@ -69,27 +69,26 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
norsp | 6 | {bio} |
phast | 6 | {bio} |
piler | 6 | {bio} |
- prime-phylo | 6 | {bio,cloud} |
+ prime-phylo | 6 | {cloud,bio} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
salmon | 6 | {bio} |
seer | 6 | {bio} |
seqsero | 6 | {bio} |
sibsim4 | 6 | {cloud,bio} |
- sigma-align | 6 | {cloud,bio,bio-phylogeny} |
+ sigma-align | 6 | {bio,cloud,bio-phylogeny} |
spread-phy | 6 | {bio,bio-phylogeny} |
- anfo | 5 | {cloud,bio} |
- bandage | 5 | {bio} |
+ anfo | 5 | {bio,cloud} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
bitseq | 5 | {bio} |
centrifuge | 5 | {bio} |
clonalorigin | 5 | {bio} |
- daligner | 5 | {bio,bio-ngs} |
- delly | 5 | {bio,covid-19} |
- embassy-domalign | 5 | {bio,cloud} |
+ daligner | 5 | {bio-ngs,bio} |
+ delly | 5 | {covid-19,bio} |
+ embassy-domalign | 5 | {cloud,bio} |
embassy-domsearch | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
harvest-tools | 5 | {bio} |
@@ -97,7 +96,6 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
lagan | 5 | {bio} |
mapsembler2 | 5 | {bio,cloud} |
maqview | 5 | {bio} |
- mencal | 5 | {tools} |
mhap | 5 | {bio-ngs,bio} |
microbegps | 5 | {bio} |
paraclu | 5 | {bio,cloud} |
@@ -105,7 +103,7 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
phyutility | 5 | {bio,cloud} |
placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
- probabel | 5 | {bio,cloud} |
+ probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
psychopy | 5 | {psychology} |
radiant | 5 | {bio} |
@@ -118,15 +116,15 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
squizz | 5 | {bio,cloud} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
+ treeview | 5 | {bio-phylogeny,bio} |
zalign | 5 | {cloud,bio} |
- abacas | 4 | {bio,covid-19} |
+ abacas | 4 | {covid-19,bio} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
- bart-view | 4 | {imaging} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
+ bandage | 4 | {bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
brig | 4 | {bio} |
- clonalframeml | 4 | {covid-19,bio} |
+ clonalframeml | 4 | {bio,covid-19} |
dascrubber | 4 | {bio} |
dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
@@ -135,20 +133,20 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
ipig | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
- libdivsufsort | 4 | {bio-dev} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
libsmithwaterman | 4 | {bio} |
mauve-aligner | 4 | {bio} |
+ mencal | 4 | {tools} |
murasaki | 4 | {bio} |
nutsqlite | 4 | {tools} |
orthanc-webviewer | 4 | {imaging} |
perm | 4 | {bio,cloud} |
poretools | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
- prottest | 4 | {bio-phylogeny,bio} |
+ prottest | 4 | {bio,bio-phylogeny} |
pscan-chip | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
@@ -160,7 +158,7 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
stacks | 4 | {bio} |
tnseq-transit | 4 | {covid-19,bio} |
tracetuner | 4 | {bio} |
- biosig4c++ | 3 | {imaging-dev,physics} |
+ bart-view | 3 | {imaging} |
canu | 3 | {bio} |
elph | 3 | {bio} |
ghmm | 3 | {bio} |
@@ -168,20 +166,20 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
kma | 3 | {bio} |
kmerresistance | 3 | {bio} |
lamarc | 3 | {bio} |
+ libdivsufsort | 3 | {bio-dev} |
libgff | 3 | {bio-dev} |
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
- mlv-smile | 3 | {bio,cloud} |
+ mlv-smile | 3 | {cloud,bio} |
mptp | 3 | {bio} |
- openslide | 3 | {imaging-dev} |
- orthanc-dicomweb | 3 | {imaging,covid-19} |
+ orthanc-dicomweb | 3 | {covid-19,imaging} |
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
pilon | 3 | {bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
quorum | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
@@ -195,6 +193,7 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
vsearch | 3 | {bio} |
yaha | 3 | {bio} |
beast2-mcmc | 2 | {bio} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
biosig4c++ | 2 | {imaging-dev,physics} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {bio,cloud} |
@@ -205,19 +204,20 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
maxflow | 2 | {imaging-dev} |
nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
+ openslide | 2 | {imaging-dev} |
pal2nal | 2 | {bio} |
phipack | 2 | {bio} |
rampler | 2 | {bio} |
skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
- stringtie | 2 | {covid-19,bio} |
+ stringtie | 2 | {bio,covid-19} |
sweed | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {bio,covid-19} |
+ varscan | 2 | {covid-19,bio} |
velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
biobambam2 | 1 | {bio,covid-19,bio-dev} |
- blasr | 1 | {bio-ngs,bio} |
+ blasr | 1 | {bio,bio-ngs} |
blimps | 1 | {bio} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
@@ -228,24 +228,24 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
libxdf | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
- oscar | 1 | {practice,tools,data} |
+ oscar | 1 | {tools,data,practice} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- python-py2bit | 1 | {bio,bio-dev} |
+ python-py2bit | 1 | {bio-dev,bio} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- spaln | 1 | {bio,covid-19} |
+ spaln | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {bio,bio-phylogeny,cloud} |
+ tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
volpack | 1 | {imaging-dev} |
acedb | 0 | {cloud,bio} |
- augur | 0 | {covid-19,bio} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -256,7 +256,7 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -287,7 +287,7 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
multiqc | 0 | {covid-19,bio} |
murasaki | 0 | {bio} |
@@ -302,9 +302,9 @@ Last-Update: Sun, 26 Apr 2020 01:42:03 +0000
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d84a48092a6e6d75b64272a796cd839be95d723e
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d84a48092a6e6d75b64272a796cd839be95d723e
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