[med-svn] [Git][med-team/trinityrnaseq][upstream] New upstream version 2.10.0+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / trinityrnaseq


Commits:
1c446ac5 by Michael R. Crusoe at 2020-04-26T17:02:08+02:00
New upstream version 2.10.0+dfsg
- - - - -


30 changed files:

- .gitmodules
- Analysis/DifferentialExpression/Glimma.Trinity.Rscript
- Analysis/DifferentialExpression/PtR
- + Analysis/DifferentialExpression/R/edgeR.TMM.minimal.R
- Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
- Analysis/DifferentialExpression/run_DE_analysis.pl
- Analysis/DifferentialExpression/run_GOseq.pl
- Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- Analysis/SuperTranscripts/pylib/Node_alignment.py
- − Butterfly/.err
- + Butterfly/README.md
- − Butterfly/build_jar.xml
- − Butterfly/src/.classpath
- − Butterfly/src/.err
- − Butterfly/src/.project
- − Butterfly/src/.settings/org.eclipse.jdt.core.prefs
- − Butterfly/src/README
- − Butterfly/src/_t_seqA.fa
- − Butterfly/src/_t_seqB.fa
- − Butterfly/src/build.xml
- − Butterfly/src/runExample.sh
- − Butterfly/src/run_NWalign.sh
- − Butterfly/src/run_butterfly_nonJar.sh
- − Butterfly/src/sample_data/c1.graph.out
- − Butterfly/src/sample_data/c1.graph.reads
- − Butterfly/src/src/AlignmentStats.java
- − Butterfly/src/src/BFLY_GLOBALS.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/1c446ac50ffd90173fe690bda699cbaced379ed7

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