[med-svn] [Git][med-team/bbmap][master] 5 commits: routine-update: New upstream version

[Dylan Aïssi]

Dylan Aïssi pushed to branch master at Debian Med / bbmap


Commits:
d7af2756 by Dylan Aïssi at 2020-04-30T08:42:39+02:00
routine-update: New upstream version

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defd9929 by Dylan Aïssi at 2020-04-30T08:42:40+02:00
New upstream version 38.82+dfsg
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39b16fb4 by Dylan Aïssi at 2020-04-30T08:42:49+02:00
Update upstream source from tag 'upstream/38.82+dfsg'

Update to upstream version '38.82+dfsg'
with Debian dir 663158947fe43f06c0c390c51b848a4f11e23d69
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c69e7ab1 by Dylan Aïssi at 2020-04-30T08:42:52+02:00
routine-update: Rules-Requires-Root: no

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f940be8b by Dylan Aïssi at 2020-04-30T08:49:42+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- README.md
- applyvariants.sh
- bbduk.sh
- callvariants.sh
- current/bloom/BloomFilterCorrectorWrapper.java
- + current/cardinality/BBLog.java
- + current/cardinality/BBLog_simple.java
- + current/cardinality/CardinalityTracker.java
- + current/cardinality/LogLog.java
- + current/cardinality/LogLog16.java
- + current/cardinality/LogLog2.java
- + current/cardinality/LogLog8.java
- + current/cardinality/LogLog8_simple.java
- + current/cardinality/LogLogWrapper.java
- current/jgi/LogLog.java → current/cardinality/LogLog_old.java
- current/jgi/MultiLogLog.java → current/cardinality/MultiLogLog.java
- + current/covid/SummarizeCoverage.java
- current/dna/Data.java
- + current/driver/Life.java
- current/jgi/AddAdapters.java
- current/jgi/BBDuk.java
- current/jgi/BBDuk2.java
- current/jgi/BBMerge.java
- current/jgi/CoveragePileup.java
- current/jgi/DedupeByMapping.java
- current/jgi/FilterReadsWithSubs.java
- current/jgi/FuseSequence.java
- current/jgi/KmerCountMulti.java
- current/jgi/RQCFilter2.java
- current/jgi/ReformatReads.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/092306bceed430b5cd31b75a754de5b7afd19825...f940be8bf173d37e09aa98a5a2873c729c2cf835

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/092306bceed430b5cd31b75a754de5b7afd19825...f940be8bf173d37e09aa98a5a2873c729c2cf835
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