Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
cada9af8 by Andreas Tille at 2020-08-01T13:43:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,75 +1,73 @@
-Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
+Last-Update: Sat, 01 Aug 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 166 | {imaging,covid-19} |
- orthanc | 91 | {practice,covid-19,imaging} |
- orthanc-wsi | 44 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 35 | {imaging-dev} |
- htsjdk | 25 | {bio-dev} |
- dicom3tools | 23 | {imaging} |
- dcm2niix | 19 | {imaging} |
- dicomscope | 19 | {imaging} |
- gnumed-server | 18 | {covid-19,practice} |
- gdcm | 16 | {covid-19,imaging} |
+ dcmtk | 165 | {imaging,covid-19} |
+ orthanc | 89 | {practice,covid-19,imaging} |
+ orthanc-wsi | 45 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 37 | {imaging-dev} |
+ dicom3tools | 25 | {imaging} |
+ htsjdk | 22 | {bio-dev} |
+ dicomscope | 21 | {imaging} |
+ dcm2niix | 20 | {imaging} |
+ gdcm | 17 | {covid-19,imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
ngs-sdk | 14 | {bio-dev} |
+ gdcm | 12 | {imaging-dev} |
insighttoolkit4 | 12 | {imaging-dev} |
- gdcm | 11 | {imaging-dev} |
- invesalius | 10 | {imaging} |
+ invesalius | 11 | {imaging} |
+ minc-tools | 9 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
adun.app | 8 | {bio} |
- minc-tools | 8 | {imaging} |
+ openslide | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
+ pixelmed | 8 | {imaging} |
psychopy | 8 | {psychology} |
- biojava-live | 7 | {bio-dev} |
+ bart-view | 7 | {imaging} |
fastlink | 7 | {bio,cloud} |
jebl2 | 7 | {bio-dev} |
melting | 7 | {cloud,bio} |
- openslide | 7 | {imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
phyutility | 7 | {bio,cloud} |
- pixelmed | 7 | {imaging} |
sibsim4 | 7 | {bio,cloud} |
sigma-align | 7 | {bio,cloud,bio-phylogeny} |
- bart-view | 6 | {imaging} |
+ biojava-live | 6 | {bio-dev} |
+ king | 6 | {typesetting,imaging} |
librg-utils-perl | 6 | {bio} |
mipe | 6 | {cloud,bio} |
obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
piler | 6 | {bio} |
stacks | 6 | {bio} |
+ vtk-dicom | 6 | {imaging} |
anfo | 5 | {cloud,bio} |
biomaj3-cli | 5 | {cloud} |
- daligner | 5 | {bio,bio-ngs} |
+ biosig4c++ | 5 | {physics,imaging} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domalign | 5 | {cloud,bio} |
embassy-domsearch | 5 | {cloud,bio} |
- king | 5 | {typesetting,imaging} |
libdivsufsort | 5 | {bio-dev} |
- mauve-aligner | 5 | {bio} |
neobio | 5 | {cloud,bio} |
orthanc-postgresql | 5 | {imaging} |
paraclu | 5 | {bio,cloud} |
perm | 5 | {cloud,bio} |
+ plastimatch | 5 | {imaging} |
probabel | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
rdp-readseq | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
saint | 5 | {bio} |
- scythe | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
squizz | 5 | {bio,cloud} |
staden | 5 | {bio} |
transtermhp | 5 | {bio} |
- vtk-dicom | 5 | {imaging} |
alter-sequence-alignment | 4 | {bio} |
biomaj3-daemon | 4 | {bio} |
bio-rainbow | 4 | {bio} |
- biosig4c++ | 4 | {physics,imaging} |
+ daligner | 4 | {bio,bio-ngs} |
dascrubber | 4 | {bio} |
- dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
ea-utils | 4 | {bio} |
edtsurf | 4 | {bio} |
@@ -84,8 +82,8 @@ Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
libncl | 4 | {bio} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
maffilter | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
phybin | 4 | {bio} |
- plastimatch | 4 | {imaging} |
predictprotein | 4 | {bio} |
proalign | 4 | {bio,bio-phylogeny} |
radiant | 4 | {bio} |
@@ -96,6 +94,7 @@ Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
runcircos-gui | 4 | {bio} |
salmon | 4 | {covid-19,bio} |
scrm | 4 | {bio} |
+ scythe | 4 | {bio} |
sprai | 4 | {bio} |
tracetuner | 4 | {bio} |
treeview | 4 | {bio,bio-phylogeny} |
@@ -106,11 +105,11 @@ Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
beast2-mcmc | 3 | {bio} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
bitseq | 3 | {bio} |
- blasr | 3 | {bio-ngs,bio} |
centrifuge | 3 | {covid-19,bio} |
clonalframeml | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
delly | 3 | {covid-19,bio} |
+ dicompyler | 3 | {oncology} |
estscan | 3 | {bio} |
hinge | 3 | {bio} |
jellyfish1 | 3 | {bio} |
@@ -119,14 +118,12 @@ Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
libpal-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
metaphlan2 | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
mrs | 3 | {bio} |
nutsqlite | 3 | {tools} |
openslide | 3 | {imaging-dev} |
oscar | 3 | {data,practice,tools} |
patman | 3 | {bio} |
- pbdagcon | 3 | {bio} |
phast | 3 | {bio} |
phipack | 3 | {bio} |
placnet | 3 | {bio} |
@@ -152,26 +149,27 @@ Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
acedb | 2 | {cloud,bio} |
arden | 2 | {cloud,bio} |
bio-tradis | 2 | {bio,bio-dev} |
+ blasr | 2 | {bio-ngs,bio} |
brig | 2 | {bio} |
busco | 2 | {bio,covid-19} |
canu | 2 | {bio} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
libctapimkt | 2 | {practice} |
+ mhap | 2 | {bio-ngs,bio} |
multiqc | 2 | {bio,covid-19} |
murasaki | 2 | {bio} |
+ pbdagcon | 2 | {bio} |
plasmidseeker | 2 | {bio} |
prottest | 2 | {bio,bio-phylogeny} |
qcumber | 2 | {bio} |
rambo-k | 2 | {bio} |
- stringtie | 2 | {bio,covid-19} |
surankco | 2 | {bio} |
zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
- conda-package-handling | 1 | {bio-dev,bio} |
embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
kmerresistance | 1 | {bio} |
@@ -190,6 +188,7 @@ Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
+ stringtie | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -198,6 +197,7 @@ Last-Update: Sat, 01 Aug 2020 01:42:03 +0000
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
+ conda-package-handling | 0 | {bio-dev,bio} |
ctn | 0 | {imaging-dev} |
cufflinks | 0 | {bio,cloud} |
dextractor | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 01 Aug 2020 01:42:04 +0000
+Last-Update: Sat, 01 Aug 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------+------------------+---------------------------------+----------------------+---------------
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cada9af8216fc281b12d73ff87e6fdc6b94907af
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cada9af8216fc281b12d73ff87e6fdc6b94907af
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