[med-svn] [Git][med-team/seqkit][master] 2 commits: Information on repacked bam files

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / seqkit


Commits:
4b78cfdf by Nilesh Patra at 2020-08-03T23:09:11+05:30
Information on repacked bam files

- - - - -
893fc0e1 by Nilesh Patra at 2020-08-03T23:10:52+05:30
Add information about test

- - - - -


2 changed files:

- + debian/README.source
- + debian/README.test


Changes:

=====================================
debian/README.source
=====================================
@@ -0,0 +1,23 @@
+Upstream provides binary files without sources for:
+
+* tests/pcs109_5k_prim.sam 
+* tests/pcs109_5k.sam
+* tests/pcs109_5k_spliced.sam
+
+These have been converted to corresponding text (.sam) files with command:
+* samtools view -h -o <out>.sam <in>.bam 
+
+And the corresponding *.sam files are added to: debian/missing-sources
+
+They can be generated back with the following commands:
+*	cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam
+*	cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam
+*	cat debian/missing-sources/pcs109_5k_spliced.sam | samtools view -Sb - > tests/pcs109_5k_spliced.bam
+*	samtools index tests/pcs109_5k_prim.bam tests/pcs109_5k_prim.bam.bai
+*	samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai
+*	samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai
+
+These commands are also being run in debian/rules since these binaries are needed for autopkgtests.
+
+ -- Nilesh Patra <npatra974 at gmail.com>  Mon, 03 Aug 2020 21:49:28 +0530
+


=====================================
debian/README.test
=====================================
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.
+



View it on GitLab: https://salsa.debian.org/med-team/seqkit/-/compare/edacb01b1eae42e2b35167998975ec5a497a78c7...893fc0e19772be089f4370ec99f9cf4b76f1f6cc

-- 
View it on GitLab: https://salsa.debian.org/med-team/seqkit/-/compare/edacb01b1eae42e2b35167998975ec5a497a78c7...893fc0e19772be089f4370ec99f9cf4b76f1f6cc
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