[med-svn] [Git][med-team/python-cobra][upstream] New upstream version 0.18.1

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / python-cobra


Commits:
40bd9413 by Andreas Tille at 2020-08-08T12:04:12+02:00
New upstream version 0.18.1
- - - - -


5 changed files:

- cobra/__init__.py
- cobra/io/sbml.py
- + release-notes/0.18.1.md
- setup.cfg
- setup.py


Changes:

=====================================
cobra/__init__.py
=====================================
@@ -41,4 +41,4 @@ from cobra import io
 from cobra import sampling
 from cobra.util import show_versions
 
-__version__ = "0.18.0"
+__version__ = "0.18.1"


=====================================
cobra/io/sbml.py
=====================================
@@ -1003,9 +1003,9 @@ def _model_to_sbml(cobra_model, f_replace=None, units=True):
     _create_parameter(model, pid=ZERO_BOUND_ID,
                       value=0, sbo=SBO_DEFAULT_FLUX_BOUND)
     _create_parameter(model, pid=BOUND_MINUS_INF,
-                      value=-float("Inf"), sbo=SBO_FLUX_BOUND)
+                      value=-float("Inf"), sbo=SBO_DEFAULT_FLUX_BOUND)
     _create_parameter(model, pid=BOUND_PLUS_INF,
-                      value=float("Inf"), sbo=SBO_FLUX_BOUND)
+                      value=float("Inf"), sbo=SBO_DEFAULT_FLUX_BOUND)
 
     # Compartments
     # FIXME: use first class compartment model (and write notes & annotations)


=====================================
release-notes/0.18.1.md
=====================================
@@ -0,0 +1,10 @@
+# Release notes for cobrapy 0.18.1
+
+## Fixes
+
+* Use the correct SBO term for unbounded (infinite bounds) reactions.
+
+## Other
+
+* Pin dependency on python-libsbml-experimental 5.18.1.
+


=====================================
setup.cfg
=====================================
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.18.0
+current_version = 0.18.1
 commit = True
 tag = True
 parse = (?P<major>\d+)


=====================================
setup.py
=====================================
@@ -38,7 +38,7 @@ except IOError:
 if __name__ == "__main__":
     setup(
         name="cobra",
-        version="0.18.0",
+        version="0.18.1",
         packages=find_packages(),
         setup_requires=setup_requirements,
         install_requires=[
@@ -50,7 +50,7 @@ if __name__ == "__main__":
             "pandas>=0.17.0",
             "optlang>=1.4.2",
             "depinfo",
-            "python-libsbml-experimental==5.18.0",
+            "python-libsbml-experimental==5.18.1",
         ],
         tests_require=[
             "jsonschema > 2.5",



View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/commit/40bd941368a727d29c8d1e507168842db3ae3468

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/commit/40bd941368a727d29c8d1e507168842db3ae3468
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