[med-svn] [Git][med-team/wtdbg2][master] Finalize autopkgtest

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / wtdbg2


Commits:
3f083959 by Nilesh Patra at 2020-08-09T21:24:28+05:30
Finalize autopkgtest

- - - - -


1 changed file:

- debian/tests/run-unit-test


Changes:

=====================================
debian/tests/run-unit-test
=====================================
@@ -27,9 +27,3 @@ wtpoa-cns -t 16 -i dbg.ctg.lay.gz -fo dbg.raw.fa
 [ -s dbg.raw.fa ] || exit 1
 echo "PASS"
 
-# polish consensus, not necessary if you want to polish the assemblies using other tools
-minimap2 -t16 -ax map-pb -r2k dbg.raw.fa pacbio_filtered.fastq | samtools sort - at 4 >dbg.bam
-samtools view -F0x900 dbg.bam | wtpoa-cns -t 16 -d dbg.raw.fa -i - -fo dbg.cns.fa
-[ -s dbg.cns.fa ] || exit 1
-echo "PASS"
-



View it on GitLab: https://salsa.debian.org/med-team/wtdbg2/-/commit/3f0839596fec4271a452d11c13e996aa6b60d7bd

-- 
View it on GitLab: https://salsa.debian.org/med-team/wtdbg2/-/commit/3f0839596fec4271a452d11c13e996aa6b60d7bd
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