[med-svn] [Git][med-team/repeatmasker-recon][master] 5 commits: Add autopkgtests

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / repeatmasker-recon


Commits:
db4471fb by Nilesh Patra at 2020-08-11T16:47:58+05:30
Add autopkgtests

- - - - -
bc8ada66 by Nilesh Patra at 2020-08-11T16:54:28+05:30
Fix watch URL

- - - - -
4ed352f9 by Nilesh Patra at 2020-08-11T16:55:20+05:30
compat version: 13, standards version: 4.5.0

- - - - -
458dd1e4 by Nilesh Patra at 2020-08-11T16:55:43+05:30
Add "Rules-Requires-Root:no"

- - - - -
59c62096 by Nilesh Patra at 2020-08-11T17:02:27+05:30
Update URLs

- - - - -


6 changed files:

- debian/control
- debian/copyright
- + debian/tests/control
- + debian/tests/run-unit-test
- debian/upstream/metadata
- debian/watch


Changes:

=====================================
debian/control
=====================================
@@ -4,12 +4,13 @@ Uploaders: Olivier Sallou <osallou at debian.org>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                help2man
-Standards-Version: 4.1.5
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker-recon
 Vcs-Git: https://salsa.debian.org/med-team/repeatmasker-recon.git
 Homepage: http://www.repeatmasker.org/
+Rules-Requires-Root: no
 
 Package: repeatmasker-recon
 Architecture: any


=====================================
debian/copyright
=====================================
@@ -1,6 +1,6 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: RECONF
-Source: http://www.repeatmasker.org/RECON-1.08.tar.gz
+Source: http://www.repeatmasker.org/RepeatModeler/RECON-1.08.tar.gz
 
 Files: *
 Copyright: 2001 Washington University School of Medicine


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,4 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
+


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,22 @@
+#!/bin/bash
+set -e
+
+pkg=repeatmasker-recon
+
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+gunzip -r *
+
+cp **/**/* -a .
+
+echo 'Test Functionality'
+repeatmasker-recon seqnames elegans.msps
+awk '$1==6' summary/eles
+echo 'PASS'
+


=====================================
debian/upstream/metadata
=====================================
@@ -10,5 +10,5 @@ Reference:
    Pages: 1269-76
    DOI: 10.1101/gr.88502
    PMID: 12176934
-   URL: http://genome.cshlp.org/content/12/8/1269.short
-   ePrint: http://genome.cshlp.org/content/12/8/1269.full.pdf+html
+   URL: https://genome.cshlp.org/content/12/8/1269.short
+   ePrint: https://genome.cshlp.org/content/12/8/1269.full.pdf+html


=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
 version=3
 
-http://www.repeatmasker.org/RECON-(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))
+http://www.repeatmasker.org/RepeatModeler/RECON-(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))



View it on GitLab: https://salsa.debian.org/med-team/repeatmasker-recon/-/compare/7d7a68e538bd5395661c4ceb17398f552262b7c0...59c62096b03ff52f845aa7a4ed627f2f1a3965d4

-- 
View it on GitLab: https://salsa.debian.org/med-team/repeatmasker-recon/-/compare/7d7a68e538bd5395661c4ceb17398f552262b7c0...59c62096b03ff52f845aa7a4ed627f2f1a3965d4
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