[med-svn] [Git][med-team/daligner][master] 7 commits: Add changes to changelog

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / daligner


Commits:
c99b53a1 by Andreas Tille at 2020-08-12T22:53:10+02:00
Add changes to changelog

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676ce9ed by Andreas Tille at 2020-08-12T22:53:42+02:00
'@' is the variable for the actual binary packages build from the source package.  It is needed only once

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c72457e6 by Andreas Tille at 2020-08-12T22:55:20+02:00
Remove unneeded comments from boilerplate

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c90b68ea by Andreas Tille at 2020-08-13T08:57:27+02:00
Install run-unit-test script to serve as a user example

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d15fb665 by Andreas Tille at 2020-08-13T08:58:06+02:00
Do not unnecessarily depend from csh

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694f2e45 by Andreas Tille at 2020-08-13T08:58:33+02:00
Make sure users who want to run the autopkgtest as example will know that it needs dazzdb

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a2f2a7aa by Andreas Tille at 2020-08-13T09:10:21+02:00
Upload to unstable

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5 changed files:

- debian/README.test
- debian/changelog
- debian/docs
- debian/tests/control
- debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -3,6 +3,7 @@ Notes on how this package can be tested.
 
 This package can be tested by running the provided test:
 
+    sudo apt install dazzdb
     sh run-unit-test
 
 in order to confirm its integrity.


=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+daligner (1.0+git20200727.ed40ce5-2) unstable; urgency=medium
+
+  * Team upload.
+  * added autopkgtests
+  * Install docs
+
+ -- Shruti Sridhar <shruti.sridhar99 at gmail.com>  Wed, 12 Aug 2020 22:52:11 +0200
+
 daligner (1.0+git20200727.ed40ce5-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/docs
=====================================
@@ -1,2 +1,3 @@
 README.md
-debian/README.*
\ No newline at end of file
+debian/README.*
+debian/tests/run-unit-test


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
 Tests: run-unit-test
-Depends: @,dazzdb, @,tcsh
+Depends: @, dazzdb
 Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -9,11 +9,8 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
-#cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
-
 cd "${AUTOPKGTEST_TMP}"
 
-#do_stuff_to_test_package#
 rangen 1.0 -r2020 >R.fasta           
 fasta2DAM R R.fasta           
 dsimulator R -c20. -r2020 >G.fasta   
@@ -24,10 +21,9 @@ DBdust G.1
 DBdust G.2                
 DBstats -mdust G              
 cat G.db
- 
-HPC.daligner -mdust -t5 G | tcsh -v
+
+HPC.daligner -mdust -t5 G | sh -v
 LAshow -c G -w50 G.1 | head
 
 # Since the output is not consistent.
 #It cannot be compared with the reference. 
-



View it on GitLab: https://salsa.debian.org/med-team/daligner/-/compare/64bebc730ba7cd8ade0bc27331b6485cf9ae34ab...a2f2a7aa105ef02f929e59577361ecf3f2cc050c

-- 
View it on GitLab: https://salsa.debian.org/med-team/daligner/-/compare/64bebc730ba7cd8ade0bc27331b6485cf9ae34ab...a2f2a7aa105ef02f929e59577361ecf3f2cc050c
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