[med-svn] [Git][med-team/wgsim][master] 11 commits: Add watch file using git mode
Andreas Tille
gitlab at salsa.debian.org
Thu Aug 13 14:39:57 BST 2020
Andreas Tille pushed to branch master at Debian Med / wgsim
Commits:
48818352 by Andreas Tille at 2020-08-13T15:01:35+02:00
Add watch file using git mode
- - - - -
645bc287 by Andreas Tille at 2020-08-13T15:02:20+02:00
New upstream version 0.3.1-r13+git20111017.a12da33
- - - - -
26646458 by Andreas Tille at 2020-08-13T15:02:20+02:00
Update upstream source from tag 'upstream/0.3.1-r13+git20111017.a12da33'
Update to upstream version '0.3.1-r13+git20111017.a12da33'
with Debian dir c3d8e55d943e2736b44839dc84fb921172ccfc5f
- - - - -
2f9c28d6 by Andreas Tille at 2020-08-13T15:02:39+02:00
routine-update: Standards-Version: 4.5.0
- - - - -
c1d55181 by Andreas Tille at 2020-08-13T15:02:39+02:00
routine-update: debhelper-compat 13
- - - - -
cf5f2427 by Andreas Tille at 2020-08-13T15:02:46+02:00
routine-update: Point Vcs fields to salsa.debian.org
- - - - -
877718db by Andreas Tille at 2020-08-13T15:02:47+02:00
routine-update: Add salsa-ci file
- - - - -
c29b46f1 by Andreas Tille at 2020-08-13T15:02:47+02:00
routine-update: Rules-Requires-Root: no
- - - - -
c525ea13 by Andreas Tille at 2020-08-13T15:02:53+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
- - - - -
0aa9bd26 by Andreas Tille at 2020-08-13T15:24:02+02:00
Fix sequence of linker options
- - - - -
9f862553 by Andreas Tille at 2020-08-13T15:27:26+02:00
Upload to unstable
- - - - -
8 changed files:
- .gitignore
- debian/changelog
- − debian/compat
- debian/control
- debian/rules
- + debian/salsa-ci.yml
- + debian/upstream/metadata
- debian/watch
Changes:
=====================================
.gitignore
=====================================
@@ -1,5 +1 @@
.*.swp
-wgsim
-debian/files
-debian/*.log
-debian/*.substvars
=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+wgsim (0.3.1-r13+git20111017.a12da33-1) unstable; urgency=medium
+
+ * Team upload.
+ * Add watch file using git mode
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Point Vcs fields to salsa.debian.org (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Set upstream metadata fields: Bug-Database, Bug-Submit.
+ * Fix sequence of linker options
+
+ -- Andreas Tille <tille at debian.org> Thu, 13 Aug 2020 15:24:09 +0200
+
wgsim (0.3.1-r13-2) unstable; urgency=low
* d/watch: Add empty watch file, with comments about upstream
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-9
=====================================
debian/control
=====================================
@@ -1,18 +1,20 @@
Source: wgsim
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Kevin Murray <spam at kdmurray.id.au>
-Build-Depends: debhelper (>= 9),
+Section: science
+Priority: optional
+Build-Depends: debhelper-compat (= 13),
zlib1g-dev
-Standards-Version: 3.9.6
+Standards-Version: 4.5.0
+Vcs-Browser: https://salsa.debian.org/med-team/wgsim
+Vcs-Git: https://salsa.debian.org/med-team/wgsim.git
Homepage: https://github.com/lh3/wgsim
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/wgsim.git
-Vcs-Git: git://anonscm.debian.org/debian-med/wgsim.git
+Rules-Requires-Root: no
Package: wgsim
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
Description: simulate sequencing reads from a reference genome
Wgsim is a small tool for simulating sequence reads from a reference genome.
It is able to simulate diploid genomes with SNPs and insertion/deletion
=====================================
debian/rules
=====================================
@@ -8,12 +8,8 @@ include /usr/share/dpkg/default.mk
override_dh_auto_build:
dh_auto_build
- cc $(CFLAGS) $(LDFLAGS) $(CPPFLAGS) -o wgsim -Wall -O3 -I. -lz -lm wgsim.c
+ cc $(CFLAGS) $(LDFLAGS) $(CPPFLAGS) -o wgsim -Wall -O3 -I. wgsim.c -lz -lm
override_dh_auto_clean:
dh_auto_clean
rm -f wgsim
-
-get-orig-source:
- @echo "Downloading source from GitHub"
- wget -O wgsim_0.3.1-r13.orig.tar.gz https://api.github.com/repos/lh3/wgsim/tarball/a12da3375ff3b51a5594d4b6fa35591173ecc229
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,3 @@
+---
+Bug-Database: https://github.com/lh3/wgsim/issues
+Bug-Submit: https://github.com/lh3/wgsim/issues/new
=====================================
debian/watch
=====================================
@@ -1,2 +1,4 @@
-# Unfortunately, upstream does not provide formal releases, however
-# the package is rarely updated.
+version=4
+
+opts="mode=git,pretty=0.3.1-r13+git%cd.%h" \
+ https://github.com/lh3/wgsim.git HEAD
View it on GitLab: https://salsa.debian.org/med-team/wgsim/-/compare/5e701771953f22e828c2d7c064cde50720677625...9f862553b94a851af08c707de7cbb94b8ca65bcc
--
View it on GitLab: https://salsa.debian.org/med-team/wgsim/-/compare/5e701771953f22e828c2d7c064cde50720677625...9f862553b94a851af08c707de7cbb94b8ca65bcc
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