[med-svn] [Git][med-team/daligner][master] 2 commits: o not hard code gcc

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / daligner


Commits:
31637185 by Andreas Tille at 2020-08-15T21:39:52+02:00
o not hard code gcc

- - - - -
5a1f9b0e by Andreas Tille at 2020-08-15T21:41:35+02:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/cross.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+daligner (1.0+git20200727.ed40ce5-3) unstable; urgency=medium
+
+  [ Helmut Grohne ]
+  * Do not hard code gcc
+    Closes: #968434
+
+ -- Andreas Tille <tille at debian.org>  Sat, 15 Aug 2020 21:39:59 +0200
+
 daligner (1.0+git20200727.ed40ce5-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/cross.patch
=====================================
@@ -0,0 +1,60 @@
+Date: Sat, 15 Aug 2020 07:24:26 +0200
+From: Helmut Grohne <helmut at subdivi.de>
+Description: Do not hard code gcc
+Bug-Debian: https://bugs.debian.org/968434
+
+--- a/Makefile
++++ b/Makefile
+@@ -10,40 +10,40 @@ ALL = daligner HPC.daligner LAsort LAmer
+ all: $(ALL)
+ 
+ daligner: daligner.c filter.c filter.h lsd.sort.c lsd.sort.h align.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS)
+ 
+ HPC.daligner: HPC.daligner.c DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAdump: LAdump.c align.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAa2b: LAa2b.c align.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAa2b LAa2b.c align.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAa2b LAa2b.c align.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ LAb2a: LAb2a.c align.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o LAb2a LAb2a.c align.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o LAb2a LAb2a.c align.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ dumpLA: dumpLA.c align.c align.h DB.c DB.h QV.c QV.h
+-	gcc $(CFLAGS) -o dumpLA dumpLA.c align.c DB.c QV.c -lm $(LDFLAGS)
++	$(CC) $(CFLAGS) -o dumpLA dumpLA.c align.c DB.c QV.c -lm $(LDFLAGS)
+ 
+ clean:
+ 	rm -f $(ALL)


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 cflags.patch
 lddflags.patch
 destdir-install.patch
+cross.patch



View it on GitLab: https://salsa.debian.org/med-team/daligner/-/compare/a2f2a7aa105ef02f929e59577361ecf3f2cc050c...5a1f9b0e404601fd4f63a9835a288007f12df1c2

-- 
View it on GitLab: https://salsa.debian.org/med-team/daligner/-/compare/a2f2a7aa105ef02f929e59577361ecf3f2cc050c...5a1f9b0e404601fd4f63a9835a288007f12df1c2
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